{ "type": "genome", "identifier": "GCA_029239355.1", "organism": "Sphingobacterium sp.", "title": "Sphingobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_029239355.1", "bioproject": "PRJNA725542", "biosample": "SAMN20393926", "wgs_master": "JAQZAZ000000000.1", "refseq_category": "na", "taxid": "341027", "species_taxid": "341027", "organism_name": "Sphingobacterium sp.", "infraspecific_name": "", "isolate": "L_E1_T20_B_bin.67", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/17", "asm_name": "ASM2923935v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/239/355/GCA_029239355.1_ASM2923935v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-17", "dateModified": "2023-03-17", "datePublished": "2023-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium sp." ], "sample_taxid": [ "341027" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Colorado, Fort Collins" ], "sample_host_location_id": [], "data_size": "1.718 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.83, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5987392", "Number of Sequences": "316", "Longest Sequences (bp)": "191265", "N50 (bp)": "34639", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "4703", "Average Protein Length": "352.8", "Coding Ratio (%)": "83.1", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobacterium prati", "strain": "strain=arapr2", "accession": "GCA_013167215.1", "taxid": 2737006, "species_taxid": 2737006, "relation_to_type": "type", "validated": true, "ani": 93.1509, "matched_fragments": 1464, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium puteale", "strain": "strain=M05W1-28", "accession": "GCA_003627955.1", "taxid": 2420510, "species_taxid": 2420510, "relation_to_type": "type", "validated": true, "ani": 87.0955, "matched_fragments": 1271, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium athyrii", "strain": "strain=M46", "accession": 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459529, "species_taxid": 459529, "relation_to_type": "type", "validated": true, "ani": 80.1055, "matched_fragments": 733, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium multivorum", "strain": "strain=NCTC11343", "accession": "GCA_900457465.1", "taxid": 28454, "species_taxid": 28454, "relation_to_type": "type", "validated": true, "ani": 79.9745, "matched_fragments": 690, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium rhinopitheci", "strain": "strain=WQ 047", "accession": "GCA_022627575.1", "taxid": 2781960, "species_taxid": 2781960, "relation_to_type": "type", "validated": true, "ani": 76.4214, "matched_fragments": 59, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium hungaricum", "strain": "strain=KB22", "accession": "GCA_015210005.1", "taxid": 2082723, "species_taxid": 2082723, 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