{ "type": "genome", "identifier": "GCA_029239705.1", "organism": "Paenibacillus sp.", "title": "Paenibacillus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_029239705.1", "bioproject": "PRJNA725542", "biosample": "SAMN20393970", "wgs_master": "JARBUK000000000.1", "refseq_category": "na", "taxid": "58172", "species_taxid": "58172", "organism_name": "Paenibacillus sp.", "infraspecific_name": "", "isolate": "L_E1_T20_C_bin.62", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/17", "asm_name": "ASM2923970v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/239/705/GCA_029239705.1_ASM2923970v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-17", "dateModified": "2023-03-17", "datePublished": "2023-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus sp." ], "sample_taxid": [ "58172" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Colorado, Fort Collins" ], "sample_host_location_id": [], "data_size": "2.139 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.46, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7496465", "Number of Sequences": "1001", "Longest Sequences (bp)": "49423", "N50 (bp)": "8878", "Gap Ratio (%)": "0.000093", "GCcontent (%)": "55.4", "Number of CDSs": "5631", "Average Protein Length": "322.4", "Coding Ratio (%)": "72.7", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus oceani", "strain": "strain=IB182363", "accession": "GCA_014705615.1", "taxid": 2772510, "species_taxid": 2772510, "relation_to_type": "type", "validated": true, "ani": 96.5084, "matched_fragments": 1453, "total_fragments": 2013, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus hemerocallicola", "strain": "strain=KCTC 33185", "accession": "GCA_006265175.1", "taxid": 1172614, "species_taxid": 1172614, "relation_to_type": "type", "validated": true, "ani": 85.0876, "matched_fragments": 943, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mesophilus", "strain": "strain=SYSU K30004", "accession": "GCA_005938385.1", "taxid": 2582849, "species_taxid": 2582849, "relation_to_type": "type", "validated": true, "ani": 79.846, "matched_fragments": 816, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus flagellatus", "strain": "strain=DXL2", "accession": "GCA_003217775.1", "taxid": 2211139, "species_taxid": 2211139, "relation_to_type": "type", "validated": true, "ani": 79.3499, "matched_fragments": 650, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ginsengarvi", "strain": "strain=KCTC 13059", "accession": "GCA_003626695.1", "taxid": 400777, "species_taxid": 400777, "relation_to_type": "type", "validated": true, "ani": 78.9069, "matched_fragments": 694, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus koleovorans", "strain": "strain=NBRC 103111", "accession": "GCA_004000845.1", "taxid": 121608, "species_taxid": 121608, "relation_to_type": "type", "validated": true, "ani": 77.3694, "matched_fragments": 268, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 76.8109, "matched_fragments": 97, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ginsengihumi", "strain": "strain=DSM 21568", "accession": "GCA_000380965.1", "taxid": 431596, "species_taxid": 431596, "relation_to_type": "type", "validated": true, "ani": 76.6973, "matched_fragments": 185, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tyrfis", "strain": "strain=MSt1", "accession": "GCA_000722545.1", "taxid": 1501230, "species_taxid": 1501230, "relation_to_type": "type", "validated": true, "ani": 76.4969, "matched_fragments": 195, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus chitinolyticus", "strain": "strain=NBRC 15660", "accession": "GCA_000739915.1", "taxid": 79263, "species_taxid": 79263, "relation_to_type": "type", "validated": true, "ani": 76.4871, "matched_fragments": 133, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.4239, "matched_fragments": 129, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piri", "strain": "strain=MS74", "accession": "GCA_004354045.1", "taxid": 2547395, "species_taxid": 2547395, "relation_to_type": "type", "validated": true, "ani": 76.3443, "matched_fragments": 164, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.2336, "matched_fragments": 98, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharibacillus deserti", "strain": "strain=WLJ055", "accession": "GCA_013618475.1", "taxid": 1634444, "species_taxid": 1634444, "relation_to_type": "type", "validated": true, "ani": 76.1037, "matched_fragments": 89, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharibacillus deserti", "strain": "strain=KCTC 33693", "accession": "GCA_013185225.1", "taxid": 1634444, "species_taxid": 1634444, "relation_to_type": "type", "validated": true, "ani": 76.1037, "matched_fragments": 89, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sonchi", "strain": "strain=LMG 24727", "accession": "GCA_016772475.1", "taxid": 373687, "species_taxid": 373687, "relation_to_type": "type", "validated": true, "ani": 75.7058, "matched_fragments": 73, "total_fragments": 2013, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.46, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014705615.1", "gtdb_species": "s__Paenibacillus_AB sp014705615", "ani": 96.5219, "matched_fragments": 1452, "total_fragments": 2013, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_AB", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006265175.1", "gtdb_species": "s__Paenibacillus_AB hemerocallicola", 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