{ "type": "genome", "identifier": "GCA_029243065.1", "organism": "Thalassotalea sp.", "title": "Thalassotalea sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universidad Andres Bello", "publication": [ {} ], "properties": { "assembly_accession": "GCA_029243065.1", "bioproject": "PRJNA729490", "biosample": "SAMN32744524", "wgs_master": "JAQWST000000000.1", "refseq_category": "na", "taxid": "1897616", "species_taxid": "1897616", "organism_name": "Thalassotalea sp.", "infraspecific_name": "", "isolate": "cluster2_bin.65", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/17", "asm_name": "ASM2924306v1", "submitter": "Universidad Andres Bello", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/243/065/GCA_029243065.1_ASM2924306v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-17", "dateModified": "2023-03-17", "datePublished": "2023-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassotalea sp." ], "sample_taxid": [ "1897616" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Comau Fjord" ], "sample_host_location_id": [], "data_size": "0.819 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 11.49, "strain_heterogeneity": 28.57, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2853107", "Number of Sequences": "645", "Longest Sequences (bp)": "30724", "N50 (bp)": "5269", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "2100", "Average Protein Length": "295.5", "Coding Ratio (%)": "65.2", "Number of rRNAs": "1", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001831495.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 78.9612, "matched_fragments": 169, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001652445.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 78.8517, "matched_fragments": 174, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 78.3755, "matched_fragments": 112, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia echini", "strain": "strain=A3", "accession": "GCA_002843355.2", "taxid": 1982103, "species_taxid": 1982103, "relation_to_type": "type", "validated": true, "ani": 78.3459, "matched_fragments": 101, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea mangrovi", "strain": "strain=ZS-4", "accession": "GCA_005116735.1", "taxid": 2572245, "species_taxid": 2572245, "relation_to_type": "type", "validated": true, "ani": 78.3108, "matched_fragments": 62, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus sediminis", "strain": "strain=JCM 17549", "accession": "GCA_004295665.1", "taxid": 718192, "species_taxid": 718192, "relation_to_type": "type", "validated": true, "ani": 78.195, "matched_fragments": 100, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocolwellia agarivorans", "strain": "strain=QM50", "accession": "GCA_002000085.1", "taxid": 1911682, "species_taxid": 1911682, "relation_to_type": "type", "validated": true, "ani": 78.072, "matched_fragments": 106, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia ponticola", "strain": "strain=OISW-25", "accession": "GCA_005885605.1", "taxid": 2304625, "species_taxid": 2304625, "relation_to_type": "type", "validated": true, "ani": 77.8845, "matched_fragments": 103, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 77.8599, "matched_fragments": 90, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia hornerae", "strain": "strain=ACAM 607", "accession": "GCA_007954355.1", "taxid": 89402, "species_taxid": 89402, "relation_to_type": "type", "validated": true, "ani": 77.8391, "matched_fragments": 94, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia piezophila", "strain": "strain=ATCC BAA-637", "accession": "GCA_000378625.1", "taxid": 211668, "species_taxid": 211668, "relation_to_type": "type", "validated": true, "ani": 77.5972, "matched_fragments": 108, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas neustonica", "strain": "strain=PAMC 28425", "accession": "GCA_001653135.1", "taxid": 1840331, "species_taxid": 1840331, "relation_to_type": "type", "validated": true, "ani": 76.686, "matched_fragments": 53, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arabiensis", "strain": "strain=JCM 17292", "accession": "GCA_001550155.1", "taxid": 874454, "species_taxid": 874454, "relation_to_type": "type", "validated": true, "ani": 76.4305, "matched_fragments": 51, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 11.49, "strain_heterogeneity": 28.57 }, "gtdb_result": [ { "accession": "GCF_007097525.1", "gtdb_species": "s__Thalassotalea_A sp007097525", "ani": 82.9275, "matched_fragments": 468, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002162925.1", "gtdb_species": "s__Thalassotalea_A sp002162925", "ani": 79.1758, "matched_fragments": 158, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764205.1", "gtdb_species": "s__Thalassotalea_A sp000764205", "ani": 78.9921, "matched_fragments": 169, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001831495.1", "gtdb_species": "s__Thalassotalea_A crassostreae", "ani": 78.9612, "matched_fragments": 169, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002836255.1", "gtdb_species": "s__Colwellia sp002836255", "ani": 78.4967, "matched_fragments": 105, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018860585.1", "gtdb_species": "s__Colwellia sp018860585", "ani": 78.4047, "matched_fragments": 98, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005116735.1", "gtdb_species": "s__Thalassotalea_A mangrovi", "ani": 78.373, "matched_fragments": 61, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004295665.1", "gtdb_species": "s__Litorilituus sediminis", "ani": 78.2349, "matched_fragments": 100, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Litorilituus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000012325.1", "gtdb_species": "s__Colwellia psychrerythraea_A", "ani": 78.2066, "matched_fragments": 106, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.43", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014076845.1", "gtdb_species": "s__Colwellia_A sp014076845", "ani": 78.1381, "matched_fragments": 85, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_018860755.1", "gtdb_species": "s__Colwellia sp018860755", "ani": 78.137, "matched_fragments": 105, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001767295.1", "gtdb_species": "s__Colwellia_A sp001767295", "ani": 78.0129, "matched_fragments": 101, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.63", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_007197775.1", "gtdb_species": "s__Thalassotalea_A sp007197775", "ani": 78.0053, "matched_fragments": 80, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764185.1", "gtdb_species": "s__Colwellia psychrerythraea_B", "ani": 77.9974, "matched_fragments": 98, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017744155.1", "gtdb_species": "s__Thalassotalea sp017744155", "ani": 77.9762, "matched_fragments": 71, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004752005.1", "gtdb_species": "s__Thalassotalea_A sp004752005", "ani": 77.9757, "matched_fragments": 113, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.63", "min_intra_species_ani": "95.63", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002000025.1", "gtdb_species": "s__Cognaticolwellia aestuarii", "ani": 77.7903, "matched_fragments": 101, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.296, "cell_length": 0.141, "doubling_h": null, "growth_tmp": 29.5, "optimum_tmp": 27.5, "optimum_ph": 7.25, "genome_size": 3584097.5, "gc_content": 38.8, "coding_genes": 3255.0, "rRNA16S_genes": 6.0, "tRNA_genes": 72.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Thalassotalea_A", "s__Thalassotalea_A sp029237915" ], "_genome_taxon": [ "Thalassotalea", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Thalassotalea_A", "s__Thalassotalea_A sp029237915", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Thalassotalea", "A", "Thalassotalea", "A", "sp029237915" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }