{ "type": "genome", "identifier": "GCA_029264635.1", "organism": "Psychrobacter sp.", "title": "Psychrobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universidad Andres Bello, Castro Lab", "publication": [ {} ], "properties": { "assembly_accession": "GCA_029264635.1", "bioproject": "PRJNA735411", "biosample": "SAMN33569524", "wgs_master": "JARIAA000000000.1", "refseq_category": "na", "taxid": "56811", "species_taxid": "56811", "organism_name": "Psychrobacter sp.", "infraspecific_name": "", "isolate": "cluster1_bin.59", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/17", "asm_name": "ASM2926463v1", "submitter": "Universidad Andres Bello, Castro Lab", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/264/635/GCA_029264635.1_ASM2926463v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-17", "dateModified": "2023-03-17", "datePublished": "2023-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychrobacter sp." ], "sample_taxid": [ "56811" ], "sample_host_organism": [ "Otaria byronia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Patagonia, Cahuelmo Fjord" ], "sample_host_location_id": [], "data_size": "0.739 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 48.38, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2576775", "Number of Sequences": "301", "Longest Sequences (bp)": "41120", "N50 (bp)": "10913", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.0", "Number of CDSs": "1987", "Average Protein Length": "311.3", "Coding Ratio (%)": "72.0", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychrobacter faecalis", "strain": "strain=DSM 14664", "accession": "GCA_016107575.1", "taxid": 180588, "species_taxid": 180588, "relation_to_type": "type", "validated": true, "ani": 79.5967, "matched_fragments": 364, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter communis", "strain": "strain=Sa4CVA2", "accession": "GCA_014836505.1", "taxid": 2762238, "species_taxid": 2762238, "relation_to_type": "type", "validated": true, "ani": 79.5267, "matched_fragments": 356, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter luti", "strain": "strain=CECT 5885", "accession": "GCA_014192115.1", "taxid": 198481, "species_taxid": 198481, "relation_to_type": "type", "validated": true, "ani": 79.3708, "matched_fragments": 390, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter glaciei", "strain": "strain=KCTC 42280", "accession": "GCA_014652895.1", "taxid": 619771, "species_taxid": 619771, "relation_to_type": "type", "validated": true, "ani": 78.8555, "matched_fragments": 365, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter arcticus", "strain": "strain=273-4", "accession": "GCA_000012305.1", "taxid": 334543, "species_taxid": 334543, "relation_to_type": "type", "validated": true, "ani": 78.8128, "matched_fragments": 325, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cryohalolentis", "strain": "strain=K5", "accession": "GCA_000013905.1", "taxid": 330922, "species_taxid": 330922, "relation_to_type": "type", "validated": true, "ani": 78.7889, "matched_fragments": 364, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cibarius", "strain": "strain=DSM 16327", "accession": "GCA_016107535.1", "taxid": 282669, "species_taxid": 282669, "relation_to_type": "type", "validated": true, "ani": 78.6993, "matched_fragments": 380, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter immobilis", "strain": "strain=DSM 7229", "accession": "GCA_003148585.1", "taxid": 498, "species_taxid": 498, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6925, "matched_fragments": 373, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter aquimaris", "strain": "strain=DSM 16329", "accession": "GCA_016107525.1", "taxid": 292733, "species_taxid": 292733, "relation_to_type": "type", "validated": true, "ani": 78.682, "matched_fragments": 375, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter fozii", "strain": "strain=CECT 5889", "accession": "GCA_003217155.1", "taxid": 198480, "species_taxid": 198480, "relation_to_type": "type", "validated": true, "ani": 78.5443, "matched_fragments": 331, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter aquaticus", "strain": "strain=CMS 56", "accession": "GCA_000471625.1", "taxid": 248452, "species_taxid": 248452, "relation_to_type": "type", "validated": true, "ani": 78.5051, "matched_fragments": 354, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter halodurans", "strain": "strain=F2608", "accession": "GCA_017498075.1", "taxid": 2818439, "species_taxid": 2818439, "relation_to_type": "type", "validated": true, "ani": 78.3421, "matched_fragments": 314, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter celer", "strain": "strain=DSM 23510", "accession": "GCA_016107555.1", "taxid": 306572, "species_taxid": 306572, "relation_to_type": "type", "validated": true, "ani": 78.2859, "matched_fragments": 326, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter frigidicola", "strain": "strain=ACAM 304", "accession": "GCA_007997305.1", "taxid": 45611, "species_taxid": 45611, "relation_to_type": "type", "validated": true, "ani": 78.1195, "matched_fragments": 289, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter coccoides", "strain": "strain=F1192", "accession": "GCA_017498085.1", "taxid": 2818440, "species_taxid": 2818440, "relation_to_type": "type", "validated": true, "ani": 78.0853, "matched_fragments": 307, "total_fragments": 712, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 48.38, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001593285.1", "gtdb_species": "s__Psychrobacter sp001593285", "ani": 81.36, "matched_fragments": 568, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001921745.1", "gtdb_species": "s__Psychrobacter sp001921745", "ani": 79.8941, "matched_fragments": 502, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_904846345.1", "gtdb_species": "s__Psychrobacter maritimus", "ani": 79.79, "matched_fragments": 398, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.41", "min_intra_species_ani": "96.16", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002377905.1", "gtdb_species": "s__Psychrobacter sp002377905", "ani": 79.656, "matched_fragments": 364, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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"num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013248965.1", "gtdb_species": "s__Psychrobacter okhotskensis", "ani": 79.2523, "matched_fragments": 390, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_008369115.1", "gtdb_species": "s__Psychrobacter sp008369115", "ani": 79.2404, "matched_fragments": 385, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_904846285.1", "gtdb_species": "s__Psychrobacter immobilis_D", "ani": 79.2052, "matched_fragments": 394, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_904846155.1", "gtdb_species": "s__Psychrobacter fulvigenes", "ani": 78.9858, "matched_fragments": 389, "total_fragments": 712, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { 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"Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Moraxellaceae", "Psychrobacter", "Psychrobacter", "sp029264635" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }