{
    "type": "genome",
    "identifier": "GCA_029556705.1",
    "organism": "Spirochaetota bacterium",
    "title": "Spirochaetota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_029556705.1",
        "bioproject": "PRJNA770806",
        "biosample": "SAMN21174819",
        "wgs_master": "JAKQBL000000000.1",
        "refseq_category": "na",
        "taxid": "2202144",
        "species_taxid": "2202144",
        "organism_name": "Spirochaetota bacterium",
        "infraspecific_name": "",
        "isolate": "USCA_metabat.102",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/04/03",
        "asm_name": "ASM2955670v1",
        "submitter": "University of Illinois Urbana-Champaign",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/556/705/GCA_029556705.1_ASM2955670v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-04-03",
    "dateModified": "2023-04-03",
    "datePublished": "2023-04-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spirochaetota bacterium"
        ],
        "sample_taxid": [
            "2202144"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Carson, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.749 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.07,
        "contamination": 6.94,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2601852",
        "Number of Sequences": "431",
        "Longest Sequences (bp)": "45377",
        "N50 (bp)": "7988",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.3",
        "Number of CDSs": "2127",
        "Average Protein Length": "310.1",
        "Coding Ratio (%)": "76.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphaerochaeta associata",
                "strain": "strain=GLS2T",
                "accession": "GCA_022869165.1",
                "taxid": 1129264,
                "species_taxid": 1129264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1496,
                "matched_fragments": 548,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta globosa",
                "strain": "strain=Buddy",
                "accession": "GCA_000190435.1",
                "taxid": 1131703,
                "species_taxid": 1131703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6271,
                "matched_fragments": 463,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta halotolerans",
                "strain": "strain=4-11",
                "accession": "GCA_003429665.1",
                "taxid": 2293840,
                "species_taxid": 2293840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9086,
                "matched_fragments": 147,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta pleomorpha",
                "strain": "strain=Grapes",
                "accession": "GCA_000236685.1",
                "taxid": 1131707,
                "species_taxid": 1131707,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2714,
                "matched_fragments": 74,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.07,
            "contamination": 6.94,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCA_002432715.1",
                "gtdb_species": "s__Sphaerochaeta sp002432715",
                "ani": 98.8465,
                "matched_fragments": 584,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012514185.1",
                "gtdb_species": "s__Sphaerochaeta sp012514185",
                "ani": 91.7002,
                "matched_fragments": 471,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012511235.1",
                "gtdb_species": "s__Sphaerochaeta sp012511235",
                "ani": 83.5481,
                "matched_fragments": 373,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000190435.1",
                "gtdb_species": "s__Sphaerochaeta globosa",
                "ani": 81.6271,
                "matched_fragments": 463,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009930195.1",
                "gtdb_species": "s__Sphaerochaeta sp009930195",
                "ani": 79.2203,
                "matched_fragments": 243,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003429665.1",
                "gtdb_species": "s__Sphaerochaeta halotolerans",
                "ani": 77.8853,
                "matched_fragments": 148,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_001604325.1",
                "gtdb_species": "s__Sphaerochaeta sp001604325",
                "ani": 77.1268,
                "matched_fragments": 105,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Sphaerochaetales",
        "f__Sphaerochaetaceae",
        "g__Sphaerochaeta",
        "s__Sphaerochaeta sp002432715"
    ],
    "_genome_taxon": [
        "Spirochaetota",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Sphaerochaetales",
        "f__Sphaerochaetaceae",
        "g__Sphaerochaeta",
        "s__Sphaerochaeta sp002432715",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Sphaerochaetales",
        "Sphaerochaetaceae",
        "Sphaerochaeta",
        "Sphaerochaeta",
        "sp002432715"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}