{
    "type": "genome",
    "identifier": "GCA_900205455.1",
    "organism": "seawater metagenome",
    "title": "seawater metagenome",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "NTNU",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900205455.1",
        "bioproject": "PRJEB14899",
        "biosample": "SAMEA104208657",
        "wgs_master": "OANJ00000000.1",
        "refseq_category": "na",
        "taxid": "1561972",
        "species_taxid": "1561972",
        "organism_name": "seawater metagenome",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/09/28",
        "asm_name": "PTR7",
        "submitter": "NTNU",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/205/455/GCA_900205455.1_PTR7",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-09-28",
    "dateModified": "2017-09-28",
    "datePublished": "2017-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "seawater metagenome"
        ],
        "sample_taxid": [
            "1561972"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.341 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
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            "max": 13.0
        },
        "completeness": 50.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4675480",
        "Number of Sequences": "284",
        "Longest Sequences (bp)": "132314",
        "N50 (bp)": "27988",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.9",
        "Number of CDSs": "4025",
        "Average Protein Length": "327.6",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thalassolituus oleivorans",
                "strain": "strain=MIL-1",
                "accession": "GCA_000355675.1",
                "taxid": 187493,
                "species_taxid": 187493,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 58,
                "total_fragments": 1421,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 50.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_016765295.1",
                "gtdb_species": "s__Oleispira sp016765295",
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                "matched_fragments": 591,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleispira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_species": "s__Oleispira antarctica",
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                "matched_fragments": 571,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleispira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.98",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002708475.1",
                "gtdb_species": "s__Oleispira sp002708475",
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                "matched_fragments": 405,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleispira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002632185.1",
                "gtdb_species": "s__Oleispira sp002632185",
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                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleispira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000355675.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Thalassolituus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_002733645.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Oleibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002683575.1",
                "gtdb_species": "s__Bermanella sp002683575",
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                "matched_fragments": 63,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Bermanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013373125.1",
                "gtdb_species": "s__Bermanella sp013373125",
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                "matched_fragments": 58,
                "total_fragments": 1421,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__DSM-6294;g__Bermanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__DSM-6294",
        "g__Oleispira",
        "s__"
    ],
    "_genome_taxon": [
        "seawater",
        "metagenome",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__DSM-6294",
        "g__Oleispira",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "DSM-6294",
        "Oleispira",
        "s",
        "",
        ""
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}