{
    "type": "genome",
    "identifier": "GCA_900754875.1",
    "organism": "Erysipelotrichaceae bacterium",
    "title": "Erysipelotrichaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900754875.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5279647",
        "wgs_master": "CAAEEM000000000.1",
        "refseq_category": "na",
        "taxid": "2049044",
        "species_taxid": "2049044",
        "organism_name": "Erysipelotrichaceae bacterium",
        "infraspecific_name": "",
        "isolate": "HGM09854",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/26",
        "asm_name": "ERS396512_33",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "GCF_900754875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/754/875/GCA_900754875.1_ERS396512_33",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-26",
    "dateModified": "2020-06-26",
    "datePublished": "2020-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Erysipelotrichaceae bacterium"
        ],
        "sample_taxid": [
            "2049044"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "0.623 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2225759",
        "Number of Sequences": "118",
        "Longest Sequences (bp)": "80181",
        "N50 (bp)": "32067",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.4",
        "Number of CDSs": "2150",
        "Average Protein Length": "302.0",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Amedibacterium intestinale",
                "strain": "strain=9CBEGH2",
                "accession": "GCA_010537335.1",
                "taxid": 2583452,
                "species_taxid": 2583452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1189,
                "matched_fragments": 642,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Longicatena caecimuris",
                "strain": "strain=DSM 29481",
                "accession": "GCA_024622185.1",
                "taxid": 1796635,
                "species_taxid": 1796635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4397,
                "matched_fragments": 140,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longicatena caecimuris",
                "strain": "strain=DSM 29481",
                "accession": "GCA_004341945.1",
                "taxid": 1796635,
                "species_taxid": 1796635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4304,
                "matched_fragments": 140,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amedibacillus dolichus",
                "strain": "strain=DSM 3991",
                "accession": "GCA_000154285.1",
                "taxid": 31971,
                "species_taxid": 31971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8738,
                "matched_fragments": 90,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Holdemanella porci",
                "strain": "strain=LKV-472-APC-3",
                "accession": "GCA_009696075.1",
                "taxid": 2652276,
                "species_taxid": 2652276,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9257,
                "matched_fragments": 59,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010537335.1",
                "gtdb_species": "s__Amedibacterium intestinale",
                "ani": 99.1189,
                "matched_fragments": 642,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Amedibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900552125.1",
                "gtdb_species": "s__Clostridium_AQ sp900552125",
                "ani": 78.6734,
                "matched_fragments": 187,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Clostridium_AQ",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_904395785.1",
                "gtdb_species": "s__Amedibacterium sp904395785",
                "ani": 78.6035,
                "matched_fragments": 138,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Amedibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004341945.1",
                "gtdb_species": "s__Longicatena caecimuris",
                "ani": 78.4487,
                "matched_fragments": 138,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Longicatena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.14",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_014337235.1",
                "gtdb_species": "s__NSJ-61 sp003433845",
                "ani": 78.0827,
                "matched_fragments": 146,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__NSJ-61",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000154285.1",
                "gtdb_species": "s__Amedibacillus dolichus",
                "ani": 77.8664,
                "matched_fragments": 89,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Amedibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.333,
        "cell_length": 0.183,
        "doubling_h": null,
        "growth_tmp": 36.057,
        "optimum_tmp": 36.214,
        "optimum_ph": 7.27,
        "genome_size": 2715599.544,
        "gc_content": 38.082,
        "coding_genes": 2417.7,
        "rRNA16S_genes": 7.3,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.235,
        "motility": 0.3,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.869,
        "aerobic_respiration": 0.13,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.066
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__Amedibacterium",
        "s__Amedibacterium intestinale"
    ],
    "_genome_taxon": [
        "Erysipelotrichaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__Erysipelotrichales",
        "f__Erysipelotrichaceae",
        "g__Amedibacterium",
        "s__Amedibacterium intestinale",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "Erysipelotrichales",
        "Erysipelotrichaceae",
        "Amedibacterium",
        "Amedibacterium",
        "intestinale"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}