{
    "type": "genome",
    "identifier": "GCA_900757165.1",
    "organism": "uncultured Butyricicoccus sp.",
    "title": "uncultured Butyricicoccus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900757165.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5278432",
        "wgs_master": "CAAEMW000000000.1",
        "refseq_category": "na",
        "taxid": "1193532",
        "species_taxid": "1193532",
        "organism_name": "uncultured Butyricicoccus sp.",
        "infraspecific_name": "",
        "isolate": "HGM12639",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/26",
        "asm_name": "ERS537299_73",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/757/165/GCA_900757165.1_ERS537299_73",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-26",
    "dateModified": "2020-06-26",
    "datePublished": "2020-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Butyricicoccus sp."
        ],
        "sample_taxid": [
            "1193532"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.677 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.67,
        "contamination": 25.0,
        "strain_heterogeneity": 87.5,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2362191",
        "Number of Sequences": "479",
        "Longest Sequences (bp)": "33350",
        "N50 (bp)": "5560",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "1943",
        "Average Protein Length": "282.3",
        "Coding Ratio (%)": "69.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_016586375.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.218,
                "matched_fragments": 351,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus faecihominis",
                "strain": "strain=JCM 31056",
                "accession": "GCA_014648015.1",
                "taxid": 1712515,
                "species_taxid": 1712515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.043,
                "matched_fragments": 351,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agathobaculum desmolans",
                "strain": "strain=ATCC 43058",
                "accession": "GCA_000701665.1",
                "taxid": 39484,
                "species_taxid": 39484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.002,
                "matched_fragments": 153,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus pullicaecorum",
                "strain": "strain=DSM 23266",
                "accession": "GCA_900167005.1",
                "taxid": 501571,
                "species_taxid": 501571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3316,
                "matched_fragments": 86,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacillus massiliensis",
                "strain": "strain=type strain: Marseille-P3216",
                "accession": "GCA_900155735.1",
                "taxid": 1871029,
                "species_taxid": 1871029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8702,
                "matched_fragments": 91,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus porcorum",
                "strain": "strain=BB10",
                "accession": "GCA_002157465.1",
                "taxid": 1945634,
                "species_taxid": 1945634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3725,
                "matched_fragments": 58,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyricicoccus intestinisimiae",
                "strain": "strain=MSJd-7",
                "accession": "GCA_018918345.1",
                "taxid": 2841509,
                "species_taxid": 2841509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7277,
                "matched_fragments": 64,
                "total_fragments": 550,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 66.67,
            "contamination": 25.0,
            "strain_heterogeneity": 87.5
        },
        "gtdb_result": [
            {
                "accession": "GCA_003096535.1",
                "gtdb_species": "s__Agathobaculum butyriciproducens",
                "ani": 92.8731,
                "matched_fragments": 332,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_003481705.1",
                "gtdb_species": "s__Agathobaculum sp003481705",
                "ani": 90.4788,
                "matched_fragments": 354,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900544475.1",
                "gtdb_species": "s__Agathobaculum sp900544475",
                "ani": 84.6906,
                "matched_fragments": 243,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900555465.1",
                "gtdb_species": "s__Agathobaculum intestinigallinarum",
                "ani": 80.4271,
                "matched_fragments": 127,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019113065.1",
                "gtdb_species": "s__Agathobaculum stercoravium",
                "ani": 80.231,
                "matched_fragments": 174,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900625105.1",
                "gtdb_species": "s__Agathobaculum sp900625105",
                "ani": 80.0534,
                "matched_fragments": 200,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019115615.1",
                "gtdb_species": "s__Agathobaculum merdavium",
                "ani": 79.9437,
                "matched_fragments": 157,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019114345.1",
                "gtdb_species": "s__Agathobaculum pullistercoris",
                "ani": 79.5699,
                "matched_fragments": 163,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900557315.1",
                "gtdb_species": "s__Agathobaculum sp900557315",
                "ani": 79.4461,
                "matched_fragments": 135,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019115425.1",
                "gtdb_species": "s__Agathobaculum merdigallinarum",
                "ani": 79.4436,
                "matched_fragments": 160,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117485.1",
                "gtdb_species": "s__Agathobaculum intestinipullorum",
                "ani": 79.2035,
                "matched_fragments": 158,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000701665.1",
                "gtdb_species": "s__Agathobaculum desmolans",
                "ani": 79.002,
                "matched_fragments": 153,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019115085.1",
                "gtdb_species": "s__Agathobaculum pullicola",
                "ani": 78.5408,
                "matched_fragments": 129,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009911355.1",
                "gtdb_species": "s__QXXE01 sp009911355",
                "ani": 77.2304,
                "matched_fragments": 61,
                "total_fragments": 550,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__QXXE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 42.0,
        "optimum_ph": 6.0,
        "genome_size": 3285179.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Butyricicoccaceae",
        "g__Agathobaculum",
        "s__"
    ],
    "_genome_taxon": [
        "uncultured",
        "Butyricicoccus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Butyricicoccaceae",
        "g__Agathobaculum",
        "s__",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Butyricicoccaceae",
        "Agathobaculum",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}