{
    "type": "genome",
    "identifier": "GCA_900757765.1",
    "organism": "Lachnospiraceae bacterium",
    "title": "Lachnospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900757765.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5279150",
        "wgs_master": "CAAEPC000000000.1",
        "refseq_category": "na",
        "taxid": "1898203",
        "species_taxid": "1898203",
        "organism_name": "Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "HGM11840",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/26",
        "asm_name": "ERS537359_21",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "GCF_900757765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/757/765/GCA_900757765.1_ERS537359_21",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-26",
    "dateModified": "2020-06-26",
    "datePublished": "2020-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "1898203"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.521 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 65.15,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1821943",
        "Number of Sequences": "128",
        "Longest Sequences (bp)": "71218",
        "N50 (bp)": "19367",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.7",
        "Number of CDSs": "1556",
        "Average Protein Length": "330.1",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Roseburia lenta",
                "strain": "strain=NSJ-9",
                "accession": "GCA_014287435.1",
                "taxid": 2763061,
                "species_taxid": 2763061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0854,
                "matched_fragments": 531,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3951,
                "matched_fragments": 66,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1 82",
                "accession": "GCA_025151715.1",
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                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.309,
                "matched_fragments": 68,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3059,
                "matched_fragments": 69,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia inulinivorans",
                "strain": "strain=DSM 16841",
                "accession": "GCA_000174195.1",
                "taxid": 360807,
                "species_taxid": 360807,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6426,
                "matched_fragments": 76,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia hominis",
                "strain": "strain=A2-183",
                "accession": "GCA_000225345.1",
                "taxid": 301301,
                "species_taxid": 301301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5887,
                "matched_fragments": 63,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia porci",
                "strain": "strain=MUC/MUC-530-WT-4D",
                "accession": "GCA_009695765.1",
                "taxid": 2605790,
                "species_taxid": 2605790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4979,
                "matched_fragments": 58,
                "total_fragments": 542,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 65.15,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003478275.1",
                "gtdb_species": "s__AM51-8 sp003478275",
                "ani": 99.0472,
                "matched_fragments": 532,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__AM51-8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900546435.1",
                "gtdb_species": "s__AM51-8 sp900546435",
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                "matched_fragments": 325,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__AM51-8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003479605.1",
                "gtdb_species": "s__RUG115 sp900066395",
                "ani": 77.376,
                "matched_fragments": 61,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__RUG115",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCA_900315735.1",
                "gtdb_species": "s__RUG115 sp900315735",
                "ani": 76.9146,
                "matched_fragments": 57,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__RUG115",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.35",
                "min_intra_species_ani": "98.93",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014287635.1",
                "gtdb_species": "s__1XD42-69 sp014287635",
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                "matched_fragments": 66,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__1XD42-69",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902363825.1",
                "gtdb_species": "s__CAG-45 sp000438375",
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                "matched_fragments": 67,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-45",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_000225345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia",
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                "mean_intra_species_ani": "97.94",
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                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
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            },
            {
                "accession": "GCF_003122485.1",
                "gtdb_species": "s__Eubacterium_I ramulus_A",
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                "total_fragments": 542,
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            },
            {
                "accession": "GCA_900543445.1",
                "gtdb_species": "s__Agathobacter sp900543445",
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                "matched_fragments": 53,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
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                "num_clustered_genomes": 3,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.277,
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        "growth_tmp": 37.0,
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        "gc_content": 42.852,
        "coding_genes": 3283.347,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.727,
        "gram_stain": 0.885,
        "sporulation": 0.414,
        "motility": 0.448,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.988,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.133,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.033,
        "vibrio_cell_shape": 0.033,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Pararoseburia",
        "s__Pararoseburia lenta"
    ],
    "_genome_taxon": [
        "Lachnospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Pararoseburia",
        "s__Pararoseburia lenta",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Pararoseburia",
        "Pararoseburia",
        "lenta"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}