{ "type": "genome", "identifier": "GCA_900757945.1", "organism": "Lachnospiraceae bacterium", "title": "Lachnospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "DOE JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_900757945.1", "bioproject": "PRJEB31003", "biosample": "SAMEA5278241", "wgs_master": "CAAEPT000000000.1", "refseq_category": "na", "taxid": "1898203", "species_taxid": "1898203", "organism_name": "Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "HGM11918", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/26", "asm_name": "ERS537392_14", "submitter": "DOE JGI", "gbrs_paired_asm": "GCF_900757945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/757/945/GCA_900757945.1_ERS537392_14", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-26", "dateModified": "2020-06-26", "datePublished": "2020-06-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Lachnospiraceae bacterium" ], "sample_taxid": [ "1898203" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.742 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2594347", "Number of Sequences": "71", "Longest Sequences (bp)": "167758", "N50 (bp)": "49820", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.5", "Number of CDSs": "2364", "Average Protein Length": "328.8", "Coding Ratio (%)": "89.9", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium fessum", "strain": "strain=SNUG30386", "accession": "GCA_003024715.1", "taxid": 2126740, "species_taxid": 2126740, "relation_to_type": "type", "validated": true, "ani": 78.0374, "matched_fragments": 149, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] aminophilum", "strain": "strain=F", "accession": "GCA_900112885.1", "taxid": 1526, "species_taxid": 1526, "relation_to_type": "type", "validated": true, "ani": 77.7186, "matched_fragments": 51, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] aminophilum", "strain": "strain=DSM 10710", "accession": "GCA_000711825.1", "taxid": 1526, "species_taxid": 1526, "relation_to_type": "type", "validated": true, "ani": 77.648, "matched_fragments": 53, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_000160095.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5583, "matched_fragments": 119, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 77.5361, "matched_fragments": 122, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5113, "matched_fragments": 117, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora aerotolerans", "strain": "strain=DSM 5434", "accession": "GCA_000687555.1", "taxid": 36832, "species_taxid": 36832, "relation_to_type": "type", "validated": true, "ani": 77.4552, "matched_fragments": 75, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3873, "matched_fragments": 92, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3861, "matched_fragments": 92, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 77.3451, "matched_fragments": 85, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium porci", "strain": "strain=WCA-389-WT-23D1", "accession": "GCA_009696375.1", "taxid": 2605778, "species_taxid": 2605778, "relation_to_type": "type", "validated": true, "ani": 77.178, "matched_fragments": 51, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 76.9047, "matched_fragments": 97, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=NCTC507", "accession": "GCA_900461315.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 76.8937, "matched_fragments": 84, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 76.6662, "matched_fragments": 52, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 76.6095, "matched_fragments": 56, "total_fragments": 827, "ani_threshold": 95, "status": 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