{ "type": "genome", "identifier": "GCA_900757985.1", "organism": "uncultured Prevotella sp.", "title": "uncultured Prevotella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_900757985.1", "bioproject": "PRJEB31003", "biosample": "SAMEA5279226", "wgs_master": "CAAEPU000000000.1", "refseq_category": "na", "taxid": "159272", "species_taxid": "159272", "organism_name": "uncultured Prevotella sp.", "infraspecific_name": "", "isolate": "HGM04834", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/26", "asm_name": "ERS537390_78", "submitter": "DOE JGI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/757/985/GCA_900757985.1_ERS537390_78", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-26", "dateModified": "2020-06-26", "datePublished": "2020-06-26", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotella sp." ], "sample_taxid": [ "159272" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.952 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3343821", "Number of Sequences": "141", "Longest Sequences (bp)": "259857", "N50 (bp)": "56557", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "2393", "Average Protein Length": "381.4", "Coding Ratio (%)": "81.9", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 77.3478, "matched_fragments": 173, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1491, "matched_fragments": 103, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 77.091, "matched_fragments": 147, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 77.0095, "matched_fragments": 99, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.9683, "matched_fragments": 130, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, 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"matched_fragments": 71, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=Bryant 23", "accession": "GCA_000025925.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 76.7973, "matched_fragments": 70, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=ATCC 15930", "accession": "GCA_000698925.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.7843, "matched_fragments": 58, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 76.7773, "matched_fragments": 121, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=JCM 12249", "accession": "GCA_000613485.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.7315, "matched_fragments": 56, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=DSM 19665", "accession": "GCA_000378085.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.724, "matched_fragments": 56, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.6944, "matched_fragments": 81, "total_fragments": 1047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentasini", 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