{
    "type": "genome",
    "identifier": "GCA_900757995.1",
    "organism": "uncultured Porphyromonas sp.",
    "title": "uncultured Porphyromonas sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900757995.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5278472",
        "wgs_master": "CAAEQB000000000.1",
        "refseq_category": "na",
        "taxid": "159274",
        "species_taxid": "159274",
        "organism_name": "uncultured Porphyromonas sp.",
        "infraspecific_name": "",
        "isolate": "HGM05459",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/26",
        "asm_name": "ERS537409_6",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/757/995/GCA_900757995.1_ERS537409_6",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-26",
    "dateModified": "2020-06-26",
    "datePublished": "2020-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Porphyromonas sp."
        ],
        "sample_taxid": [
            "159274"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.620 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2169640",
        "Number of Sequences": "144",
        "Longest Sequences (bp)": "63620",
        "N50 (bp)": "22038",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.7",
        "Number of CDSs": "1599",
        "Average Protein Length": "375.6",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Porphyromonas asaccharolytica",
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                "accession": "GCA_000212375.1",
                "taxid": 28123,
                "species_taxid": 28123,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Porphyromonas uenonis",
                "strain": "strain=DSM 23387",
                "accession": "GCA_000482365.1",
                "taxid": 281920,
                "species_taxid": 281920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8118,
                "matched_fragments": 519,
                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Porphyromonas uenonis",
                "strain": "strain=JCM 13868",
                "accession": "GCA_000613705.1",
                "taxid": 281920,
                "species_taxid": 281920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7967,
                "matched_fragments": 510,
                "total_fragments": 653,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900548415.1",
                "gtdb_species": "s__Porphyromonas sp900548415",
                "ani": 96.0574,
                "matched_fragments": 314,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.69",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000212375.1",
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                "ani": 91.0163,
                "matched_fragments": 527,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900546675.1",
                "gtdb_species": "s__Porphyromonas sp900546675",
                "ani": 90.9852,
                "matched_fragments": 433,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900538385.1",
                "gtdb_species": "s__Porphyromonas sp900538385",
                "ani": 90.7787,
                "matched_fragments": 489,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.10",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900539765.1",
                "gtdb_species": "s__Porphyromonas sp900539765",
                "ani": 90.6098,
                "matched_fragments": 502,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000482365.1",
                "gtdb_species": "s__Porphyromonas uenonis",
                "ani": 89.7982,
                "matched_fragments": 519,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900539155.1",
                "gtdb_species": "s__Porphyromonas sp900539155",
                "ani": 89.4007,
                "matched_fragments": 470,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.94",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000174775.1",
                "gtdb_species": "s__Porphyromonas uenonis_A",
                "ani": 89.0565,
                "matched_fragments": 504,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.346,
        "cell_length": 0.057,
        "doubling_h": 0.809,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.694,
        "optimum_ph": 7.825,
        "genome_size": 2392756.682,
        "gc_content": 47.952,
        "coding_genes": 1811.644,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Porphyromonadaceae",
        "g__Porphyromonas",
        "s__Porphyromonas sp900548415"
    ],
    "_genome_taxon": [
        "uncultured",
        "Porphyromonas",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Porphyromonadaceae",
        "g__Porphyromonas",
        "s__Porphyromonas sp900548415",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Porphyromonadaceae",
        "Porphyromonas",
        "Porphyromonas",
        "sp900548415"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}