{ "type": "genome", "identifier": "GCA_900758045.1", "organism": "Fusobacteriaceae bacterium", "title": "Fusobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "DOE JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_900758045.1", "bioproject": "PRJEB31003", "biosample": "SAMEA5278310", "wgs_master": "CAAEPZ000000000.1", "refseq_category": "na", "taxid": "2053555", "species_taxid": "2053555", "organism_name": "Fusobacteriaceae bacterium", "infraspecific_name": "", "isolate": "HGM14322", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/26", "asm_name": "ERS537408_29", "submitter": "DOE JGI", "gbrs_paired_asm": "GCF_900758045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/758/045/GCA_900758045.1_ERS537408_29", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-26", "dateModified": "2020-06-26", "datePublished": "2020-06-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Fusobacteriaceae bacterium" ], "sample_taxid": [ "2053555" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.516 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1892473", "Number of Sequences": "41", "Longest Sequences (bp)": "385385", "N50 (bp)": "99051", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.6", "Number of CDSs": "1777", "Average Protein Length": "321.8", "Coding Ratio (%)": "90.6", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fusobacterium necrogenes", "strain": "strain=NCTC10723", "accession": "GCA_900450765.1", "taxid": 858, "species_taxid": 858, "relation_to_type": "type", "validated": true, "ani": 78.8269, "matched_fragments": 268, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium varium", "strain": "strain=NCTC10560", "accession": "GCA_900637705.1", "taxid": 856, "species_taxid": 856, "relation_to_type": "type", "validated": true, "ani": 78.2768, "matched_fragments": 254, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium ulcerans", "strain": "strain=ATCC 49185", "accession": "GCA_003019675.1", "taxid": 861, "species_taxid": 861, "relation_to_type": "type", "validated": true, "ani": 78.1172, "matched_fragments": 236, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium ulcerans", "strain": "strain=ATCC 49185", "accession": "GCA_000158315.2", "taxid": 861, "species_taxid": 861, "relation_to_type": "type", "validated": true, "ani": 78.0898, "matched_fragments": 242, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium perfoetens", "strain": "strain=ATCC 29250", "accession": "GCA_000622245.1", "taxid": 852, "species_taxid": 852, "relation_to_type": "type", "validated": true, "ani": 77.1091, "matched_fragments": 175, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium pseudoperiodonticum", "strain": "strain=KCOM 1259", "accession": "GCA_002761955.1", "taxid": 2663009, "species_taxid": 2663009, "relation_to_type": "type", "validated": true, "ani": 77.0703, "matched_fragments": 120, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cetobacterium ceti", "strain": "strain=ATCC 700028", "accession": "GCA_900167275.1", "taxid": 180163, "species_taxid": 180163, "relation_to_type": "type", "validated": true, "ani": 77.0348, "matched_fragments": 158, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium massiliense", "strain": "strain=Marseille-P2749", "accession": "GCA_900095705.1", "taxid": 1852365, "species_taxid": 1852365, "relation_to_type": "type", "validated": true, "ani": 76.9798, "matched_fragments": 133, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=KCOM 1249", "accession": "GCA_014217355.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 76.9143, "matched_fragments": 138, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium hwasookii", "strain": "strain=ChDC F128", "accession": "GCA_000292935.1", "taxid": 1583098, "species_taxid": 1583098, "relation_to_type": "type", "validated": true, "ani": 76.8492, "matched_fragments": 136, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium canifelinum", "strain": "strain=FDAARGOS_1126", "accession": "GCA_016724785.1", "taxid": 285729, "species_taxid": 285729, "relation_to_type": "type", "validated": true, "ani": 76.7111, "matched_fragments": 133, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium nucleatum subsp. polymorphum", "strain": "strain=NCTC10562", "accession": "GCA_001457555.1", "taxid": 76857, "species_taxid": 851, "relation_to_type": "type", "validated": true, "ani": 76.6928, "matched_fragments": 157, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cetobacterium somerae", "strain": "strain=ATCC BAA-474", "accession": "GCA_000479045.1", "taxid": 188913, "species_taxid": 188913, "relation_to_type": "type", "validated": true, "ani": 76.6602, "matched_fragments": 155, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium nucleatum subsp. polymorphum", "strain": "strain=ATCC 10953", "accession": "GCA_000153625.1", "taxid": 76857, "species_taxid": 851, "relation_to_type": "type", "validated": true, "ani": 76.6083, "matched_fragments": 158, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium periodonticum", "strain": "strain=ATCC 33693", "accession": "GCA_000160475.1", "taxid": 860, "species_taxid": 860, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5528, "matched_fragments": 146, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fusobacterium russii", "strain": "strain=593A", "accession": "GCA_000381725.1", "taxid": 854, "species_taxid": 854, "relation_to_type": "type", "validated": true, "ani": 76.4323, "matched_fragments": 86, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrilyobacter atlanticus", "strain": "strain=DSM 19335", "accession": "GCA_000426625.1", "taxid": 271091, "species_taxid": 271091, "relation_to_type": "type", "validated": true, "ani": 75.5681, "matched_fragments": 73, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014337255.1", "gtdb_species": "s__Fusobacterium_A sp900015295", "ani": 99.4507, "matched_fragments": 577, "total_fragments": 612, "gtdb_taxonomy": 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