{
    "type": "genome",
    "identifier": "GCA_900758745.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900758745.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5279264",
        "wgs_master": "CAAEST000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "HGM13346",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/26",
        "asm_name": "ERS608550_86",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "GCF_900758745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/758/745/GCA_900758745.1_ERS608550_86",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-26",
    "dateModified": "2020-06-26",
    "datePublished": "2020-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.750 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2638306",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "278284",
        "N50 (bp)": "71501",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.9",
        "Number of CDSs": "2317",
        "Average Protein Length": "324.9",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ruminococcus albus",
                "strain": "strain=7",
                "accession": "GCA_000179635.2",
                "taxid": 1264,
                "species_taxid": 1264,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.1897,
                "matched_fragments": 50,
                "total_fragments": 839,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruminococcus albus",
                "strain": "strain=DSM 20455",
                "accession": "GCA_000621285.1",
                "taxid": 1264,
                "species_taxid": 1264,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.1263,
                "matched_fragments": 51,
                "total_fragments": 839,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900539195.1",
                "gtdb_species": "s__Ruminiclostridium_E sp900539195",
                "ani": 98.7246,
                "matched_fragments": 727,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "98.06",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000154325.1",
                "gtdb_species": "s__Ruminiclostridium_E siraeum",
                "ani": 92.4585,
                "matched_fragments": 648,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCA_017935365.1",
                "gtdb_species": "s__Ruminiclostridium_E sp017935365",
                "ani": 91.1095,
                "matched_fragments": 692,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003512525.1",
                "gtdb_species": "s__Ruminiclostridium_E sp003512525",
                "ani": 89.0881,
                "matched_fragments": 631,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002437415.1",
                "gtdb_species": "s__Ruminiclostridium_E sp002437415",
                "ani": 86.7714,
                "matched_fragments": 626,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016302655.1",
                "gtdb_species": "s__Ruminiclostridium_E sp016302655",
                "ani": 81.3959,
                "matched_fragments": 274,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017465545.1",
                "gtdb_species": "s__Ruminiclostridium_E sp017465545",
                "ani": 78.641,
                "matched_fragments": 217,
                "total_fragments": 839,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminiclostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.25,
        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruminiclostridium_E",
        "s__Ruminiclostridium_E sp900539195"
    ],
    "_genome_taxon": [
        "Oscillospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruminiclostridium_E",
        "s__Ruminiclostridium_E sp900539195",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Ruminiclostridium",
        "E",
        "Ruminiclostridium",
        "E",
        "sp900539195"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}