{
    "type": "genome",
    "identifier": "GCA_900758875.1",
    "organism": "uncultured Gordonibacter sp.",
    "title": "uncultured Gordonibacter sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900758875.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5279733",
        "wgs_master": "CAAETC000000000.1",
        "refseq_category": "na",
        "taxid": "886349",
        "species_taxid": "886349",
        "organism_name": "uncultured Gordonibacter sp.",
        "infraspecific_name": "",
        "isolate": "HGM04370",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/26",
        "asm_name": "ERS608568_34",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/758/875/GCA_900758875.1_ERS608568_34",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-26",
    "dateModified": "2020-06-26",
    "datePublished": "2020-06-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Gordonibacter sp."
        ],
        "sample_taxid": [
            "886349"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.594 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 53.89,
        "contamination": 7.7,
        "strain_heterogeneity": 42.86,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2096951",
        "Number of Sequences": "1038",
        "Longest Sequences (bp)": "15417",
        "N50 (bp)": "2129",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "953",
        "Average Protein Length": "281.6",
        "Coding Ratio (%)": "38.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gordonibacter pamelaeae",
                "strain": "strain=7-10-1-bT",
                "accession": "GCA_000210055.1",
                "taxid": 471189,
                "species_taxid": 471189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7804,
                "matched_fragments": 136,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonibacter urolithinfaciens",
                "strain": "strain=DSM 27213T",
                "accession": "GCA_900199375.1",
                "taxid": 1335613,
                "species_taxid": 1335613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.6782,
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                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonibacter urolithinfaciens",
                "strain": "strain=DSM 27213",
                "accession": "GCA_003788975.1",
                "taxid": 1335613,
                "species_taxid": 1335613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.6188,
                "matched_fragments": 131,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=ATCC 25559",
                "accession": "GCA_003340105.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8631,
                "matched_fragments": 101,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=DSM 2243",
                "accession": "GCA_003339975.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7973,
                "matched_fragments": 101,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=DSM 2243",
                "accession": "GCA_000024265.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7631,
                "matched_fragments": 103,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=UCSF2243",
                "accession": "GCA_003339945.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.665,
                "matched_fragments": 102,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella guodeyinii",
                "strain": "strain=HF-1101",
                "accession": "GCA_009834925.2",
                "taxid": 2690837,
                "species_taxid": 2690837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.115,
                "matched_fragments": 109,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella timonensis",
                "strain": "strain=Marseille-P3135",
                "accession": "GCA_900184265.1",
                "taxid": 1871008,
                "species_taxid": 1871008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7264,
                "matched_fragments": 104,
                "total_fragments": 176,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 53.89,
            "contamination": 7.7,
            "strain_heterogeneity": 42.86
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        "gtdb_result": [
            {
                "accession": "GCF_000210055.1",
                "gtdb_species": "s__Gordonibacter pamelaeae",
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                "matched_fragments": 135,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "97.59",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900199375.1",
                "gtdb_species": "s__Gordonibacter urolithinfaciens",
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                "matched_fragments": 131,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.45",
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                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_000024265.1",
                "gtdb_species": "s__Eggerthella lenta",
                "ani": 88.8998,
                "matched_fragments": 102,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 72,
                "status": "-"
            },
            {
                "accession": "GCA_900170005.1",
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                "matched_fragments": 127,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003339845.1",
                "gtdb_species": "s__Gordonibacter sp003339845",
                "ani": 86.2111,
                "matched_fragments": 121,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009834925.2",
                "gtdb_species": "s__Eggerthella sp014287365",
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                "matched_fragments": 109,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
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                "mean_intra_species_ani": "97.74",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_900184265.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_902386925.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Arabia",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella",
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            {
                "accession": "GCF_002159915.1",
                "gtdb_species": "s__Rubneribacter sp002159915",
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                "accession": "GCA_910589695.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_904420215.1",
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                "matched_fragments": 72,
                "total_fragments": 176,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAJFUR01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.28,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.5,
        "optimum_ph": null,
        "genome_size": 3617021.0,
        "gc_content": 63.876,
        "coding_genes": 2617.0,
        "rRNA16S_genes": 2.0,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Eggerthellaceae",
        "g__Gordonibacter",
        "s__"
    ],
    "_genome_taxon": [
        "uncultured",
        "Gordonibacter",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Coriobacteriia",
        "o__Coriobacteriales",
        "f__Eggerthellaceae",
        "g__Gordonibacter",
        "s__",
        "Bacteria",
        "Actinomycetota",
        "Coriobacteriia",
        "Coriobacteriales",
        "Eggerthellaceae",
        "Gordonibacter",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}