{
    "type": "genome",
    "identifier": "GCA_900762775.1",
    "organism": "uncultured Collinsella sp.",
    "title": "uncultured Collinsella sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900762775.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5280006",
        "wgs_master": "CAAFHS000000000.1",
        "refseq_category": "na",
        "taxid": "165190",
        "species_taxid": "165190",
        "organism_name": "uncultured Collinsella sp.",
        "infraspecific_name": "",
        "isolate": "HGM04312",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/25",
        "asm_name": "SRS148721_6",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/762/775/GCA_900762775.1_SRS148721_6",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-25",
    "dateModified": "2020-06-25",
    "datePublished": "2020-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Collinsella sp."
        ],
        "sample_taxid": [
            "165190"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.406 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 61.75,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1388210",
        "Number of Sequences": "797",
        "Longest Sequences (bp)": "13177",
        "N50 (bp)": "1745",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.2",
        "Number of CDSs": "633",
        "Average Protein Length": "236.5",
        "Coding Ratio (%)": "32.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=ATCC 25986",
                "accession": "GCA_000169035.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.9507,
                "matched_fragments": 57,
                "total_fragments": 71,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=JCM 10188",
                "accession": "GCA_010509075.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7804,
                "matched_fragments": 58,
                "total_fragments": 71,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=NCTC11838",
                "accession": "GCA_900461335.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7519,
                "matched_fragments": 58,
                "total_fragments": 71,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 61.75,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_900541245.1",
                "gtdb_species": "s__Collinsella sp900541245",
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                "matched_fragments": 55,
                "total_fragments": 71,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.072,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_905209455.1",
                "gtdb_species": "s__Collinsella sp905209455",
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                "matched_fragments": 55,
                "total_fragments": 71,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.1399,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_905210085.1",
                "gtdb_species": "s__Collinsella sp905210085",
                "ani": 95.3522,
                "matched_fragments": 54,
                "total_fragments": 71,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900542555.1",
                "gtdb_species": "s__Collinsella sp900542555",
                "ani": 95.3147,
                "matched_fragments": 56,
                "total_fragments": 71,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_019041915.1",
                "gtdb_species": "s__Collinsella sp019041915",
                "ani": 95.2633,
                "matched_fragments": 55,
                "total_fragments": 71,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.145,
                "mean_intra_species_ani": "96.63",
                "min_intra_species_ani": "95.48",
                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 6,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900541855.1",
                "gtdb_species": "s__Collinsella sp900541855",
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                "matched_fragments": 55,
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                "ani_circumscription_radius": 95.0387,
                "mean_intra_species_ani": "95.91",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900544235.1",
                "gtdb_species": "s__Collinsella sp900544235",
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                "matched_fragments": 56,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.05",
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                "num_clustered_genomes": 3,
                "status": "inconclusive"
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            {
                "accession": "GCA_900754445.1",
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                "mean_intra_species_ani": "96.73",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
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                "accession": "GCA_018381235.1",
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                "ani_circumscription_radius": 95.0673,
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                "accession": "GCA_900757505.1",
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            },
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                "status": "-"
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                "gtdb_species": "s__Collinsella sp900551185",
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                "gtdb_species": "s__Collinsella sp900542305",
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                "mean_intra_species_ani": "N/A",
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                "gtdb_species": "s__Collinsella sp905198825",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_900545075.1",
                "gtdb_species": "s__Collinsella sp900545075",
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            },
            {
                "accession": "GCA_905215225.1",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "g__Collinsella",
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    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
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        "f__Coriobacteriaceae",
        "g__Collinsella",
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        "Bacteria",
        "Actinomycetota",
        "Coriobacteriia",
        "Coriobacteriales",
        "Coriobacteriaceae",
        "Collinsella",
        "Collinsella",
        "sp900752425"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}