{
    "type": "genome",
    "identifier": "GCA_900764355.1",
    "organism": "uncultured Oscillibacter sp.",
    "title": "uncultured Oscillibacter sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900764355.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5279699",
        "wgs_master": "CAAFNS000000000.1",
        "refseq_category": "na",
        "taxid": "876091",
        "species_taxid": "876091",
        "organism_name": "uncultured Oscillibacter sp.",
        "infraspecific_name": "",
        "isolate": "HGM13157",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/25",
        "asm_name": "SRS1596872_6",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/764/355/GCA_900764355.1_SRS1596872_6",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-25",
    "dateModified": "2020-06-25",
    "datePublished": "2020-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Oscillibacter sp."
        ],
        "sample_taxid": [
            "876091"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.407 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 40.62,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1407833",
        "Number of Sequences": "503",
        "Longest Sequences (bp)": "39611",
        "N50 (bp)": "3153",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.7",
        "Number of CDSs": "1002",
        "Average Protein Length": "254.4",
        "Coding Ratio (%)": "54.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Vescimonas coprocola",
                "strain": "strain=MM50",
                "accession": "GCA_018408575.1",
                "taxid": 2714355,
                "species_taxid": 2714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1571,
                "matched_fragments": 62,
                "total_fragments": 197,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter welbionis",
                "strain": "strain=J115",
                "accession": "GCA_005121165.3",
                "taxid": 2093857,
                "species_taxid": 2093857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.565,
                "matched_fragments": 69,
                "total_fragments": 197,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysosmobacter acutus",
                "strain": "strain=MSJ-2",
                "accession": "GCA_018919205.1",
                "taxid": 2841504,
                "species_taxid": 2841504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4185,
                "matched_fragments": 54,
                "total_fragments": 197,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 40.62,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014297285.1",
                "gtdb_species": "s__Dysosmobacter sp001916835",
                "ani": 94.5339,
                "matched_fragments": 113,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "96.30",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_900544105.1",
                "gtdb_species": "s__Dysosmobacter sp900544105",
                "ani": 91.6294,
                "matched_fragments": 99,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.36",
                "min_intra_species_ani": "97.36",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000435975.1",
                "gtdb_species": "s__CAG-83 sp000435975",
                "ani": 87.546,
                "matched_fragments": 77,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900542115.1",
                "gtdb_species": "s__Dysosmobacter sp900542115",
                "ani": 83.7001,
                "matched_fragments": 77,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "98.19",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018228685.1",
                "gtdb_species": "s__CAG-83 sp001916855",
                "ani": 83.6114,
                "matched_fragments": 76,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "95.43",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_900550685.1",
                "gtdb_species": "s__Dysosmobacter sp900550685",
                "ani": 83.5694,
                "matched_fragments": 77,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900544615.1",
                "gtdb_species": "s__Dysosmobacter sp900544615",
                "ani": 83.5361,
                "matched_fragments": 83,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017937405.1",
                "gtdb_species": "s__Dysosmobacter sp017937405",
                "ani": 79.5162,
                "matched_fragments": 66,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900547745.1",
                "gtdb_species": "s__CAG-83 sp900547745",
                "ani": 79.3734,
                "matched_fragments": 55,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902388735.1",
                "gtdb_species": "s__CAG-83 sp902388735",
                "ani": 79.1276,
                "matched_fragments": 53,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-83",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910584075.1",
                "gtdb_species": "s__Dysosmobacter sp910584075",
                "ani": 78.4579,
                "matched_fragments": 63,
                "total_fragments": 197,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Dysosmobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.25,
        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Dysosmobacter",
        "s__Dysosmobacter segnis"
    ],
    "_genome_taxon": [
        "uncultured",
        "Oscillibacter",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__Dysosmobacter",
        "s__Dysosmobacter segnis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Oscillospiraceae",
        "Dysosmobacter",
        "Dysosmobacter",
        "segnis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}