{
    "type": "genome",
    "identifier": "GCA_900764685.1",
    "organism": "uncultured Collinsella sp.",
    "title": "uncultured Collinsella sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900764685.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5279480",
        "wgs_master": "CAAFOW000000000.1",
        "refseq_category": "na",
        "taxid": "165190",
        "species_taxid": "165190",
        "organism_name": "uncultured Collinsella sp.",
        "infraspecific_name": "",
        "isolate": "HGM04172",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/25",
        "asm_name": "SRS2320659_29",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/764/685/GCA_900764685.1_SRS2320659_29",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-25",
    "dateModified": "2020-06-25",
    "datePublished": "2020-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Collinsella sp."
        ],
        "sample_taxid": [
            "165190"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.483 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.34,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1648873",
        "Number of Sequences": "931",
        "Longest Sequences (bp)": "16500",
        "N50 (bp)": "1786",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.9",
        "Number of CDSs": "764",
        "Average Protein Length": "246.1",
        "Coding Ratio (%)": "34.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=NCTC11838",
                "accession": "GCA_900461335.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9266,
                "matched_fragments": 57,
                "total_fragments": 82,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=JCM 10188",
                "accession": "GCA_010509075.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9235,
                "matched_fragments": 57,
                "total_fragments": 82,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Collinsella aerofaciens",
                "strain": "strain=ATCC 25986",
                "accession": "GCA_000169035.1",
                "taxid": 74426,
                "species_taxid": 74426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.8681,
                "matched_fragments": 58,
                "total_fragments": 82,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 77.34,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_905216145.1",
                "gtdb_species": "s__Collinsella sp905216145",
                "ani": 90.8825,
                "matched_fragments": 56,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900545835.1",
                "gtdb_species": "s__Collinsella sp900545835",
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                "matched_fragments": 53,
                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0748,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900542635.1",
                "gtdb_species": "s__Collinsella sp900542635",
                "ani": 90.7423,
                "matched_fragments": 54,
                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0787,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900540995.1",
                "gtdb_species": "s__Collinsella sp900540995",
                "ani": 90.7356,
                "matched_fragments": 57,
                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900768435.1",
                "gtdb_species": "s__Collinsella sp900768435",
                "ani": 90.46,
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                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900541745.1",
                "gtdb_species": "s__Collinsella sp900541745",
                "ani": 90.3382,
                "matched_fragments": 56,
                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.25",
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                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_900754075.1",
                "gtdb_species": "s__Collinsella sp900754075",
                "ani": 90.2795,
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                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003437035.1",
                "gtdb_species": "s__Collinsella sp003437035",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.081,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900540855.1",
                "gtdb_species": "s__Collinsella sp900540855",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
                "min_intra_species_ani": "95.32",
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                "min_intra_species_af": "0.90",
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                "status": "-"
            },
            {
                "accession": "GCA_900541685.1",
                "gtdb_species": "s__Collinsella sp900541685",
                "ani": 90.0769,
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                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.037,
                "mean_intra_species_ani": "96.60",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900550785.1",
                "gtdb_species": "s__Collinsella sp900550785",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900554495.1",
                "gtdb_species": "s__Collinsella sp900554495",
                "ani": 90.0133,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900759565.1",
                "gtdb_species": "s__Collinsella sp900759565",
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                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
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                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900547835.1",
                "gtdb_species": "s__Collinsella sp900547835",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_900756725.1",
                "gtdb_species": "s__Collinsella sp900756725",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
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                "mean_intra_species_af": "0.81",
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                "status": "-"
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                "gtdb_species": "s__Collinsella sp900540095",
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                "total_fragments": 82,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
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            {
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                "gtdb_species": "s__Collinsella sp003465825",
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            {
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                "gtdb_species": "s__Collinsella sp000434535",
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                "gtdb_species": "s__Collinsella sp902362275",
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            {
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                "gtdb_species": "s__Collinsella sp900551205",
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                "min_intra_species_af": "0.90",
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            },
            {
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                "gtdb_species": "s__Collinsella sp900552345",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_905215095.1",
                "gtdb_species": "s__Collinsella sp905215095",
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                "status": "-"
            },
            {
                "accession": "GCA_900761085.1",
                "gtdb_species": "s__Collinsella sp900761085",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900548935.1",
                "gtdb_species": "s__Collinsella sp900548935",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003466125.1",
                "gtdb_species": "s__Collinsella sp003466125",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella",
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                "status": "-"
            },
            {
                "accession": "GCA_900758845.1",
                "gtdb_species": "s__Collinsella sp900758845",
                "ani": 89.0274,
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
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        "Actinomycetota",
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        {
            "id": "MEO_0000054",
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    ],
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}