{
    "type": "genome",
    "identifier": "GCA_900764935.1",
    "organism": "uncultured Bacteroides sp.",
    "title": "uncultured Bacteroides sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900764935.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5280119",
        "wgs_master": "CAAFPV000000000.1",
        "refseq_category": "na",
        "taxid": "162156",
        "species_taxid": "162156",
        "organism_name": "uncultured Bacteroides sp.",
        "infraspecific_name": "",
        "isolate": "HGM04665",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/25",
        "asm_name": "SRS259485_25",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/764/935/GCA_900764935.1_SRS259485_25",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-25",
    "dateModified": "2020-06-25",
    "datePublished": "2020-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroides sp."
        ],
        "sample_taxid": [
            "162156"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.010 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 43.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3505282",
        "Number of Sequences": "485",
        "Longest Sequences (bp)": "69667",
        "N50 (bp)": "12827",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.6",
        "Number of CDSs": "2373",
        "Average Protein Length": "376.9",
        "Coding Ratio (%)": "76.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "5",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI-5482",
                "accession": "GCA_020179495.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.2136,
                "matched_fragments": 615,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI-5482",
                "accession": "GCA_002959695.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.1519,
                "matched_fragments": 621,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=NCTC10582",
                "accession": "GCA_900445595.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.1502,
                "matched_fragments": 615,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI 5482",
                "accession": "GCA_022453665.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0976,
                "matched_fragments": 622,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI-5482",
                "accession": "GCA_000011065.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0695,
                "matched_fragments": 625,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_023277905.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0139,
                "matched_fragments": 255,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=FDAARGOS_1516",
                "accession": "GCA_020149745.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.6533,
                "matched_fragments": 317,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=ATCC 8483",
                "accession": "GCA_025146775.1",
                "taxid": 28116,
                "species_taxid": 28116,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.6048,
                "matched_fragments": 320,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides muris",
                "strain": "strain=KH365_2",
                "accession": "GCA_024704915.1",
                "taxid": 2937417,
                "species_taxid": 2937417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8962,
                "matched_fragments": 96,
                "total_fragments": 922,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 43.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000011065.1",
                "gtdb_species": "s__Bacteroides thetaiotaomicron",
                "ani": 96.1003,
                "matched_fragments": 624,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "97.24",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 121,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_000025985.1",
                "gtdb_species": "s__Bacteroides fragilis",
                "ani": 95.4059,
                "matched_fragments": 343,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 194,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_900106755.1",
                "gtdb_species": "s__Bacteroides faecis",
                "ani": 87.2126,
                "matched_fragments": 504,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_002849695.1",
                "gtdb_species": "s__Bacteroides fragilis_A",
                "ani": 85.4345,
                "matched_fragments": 309,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 39,
                "status": "-"
            },
            {
                "accession": "GCA_900761785.1",
                "gtdb_species": "s__Bacteroides sp900761785",
                "ani": 84.6269,
                "matched_fragments": 372,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014750685.1",
                "gtdb_species": "s__Bacteroides sp014750685",
                "ani": 80.1026,
                "matched_fragments": 315,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012113595.1",
                "gtdb_species": "s__Bacteroides sp012113595",
                "ani": 79.952,
                "matched_fragments": 318,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009193295.2",
                "gtdb_species": "s__Bacteroides luhongzhouii",
                "ani": 79.8754,
                "matched_fragments": 293,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900130125.1",
                "gtdb_species": "s__Bacteroides congonensis",
                "ani": 79.719,
                "matched_fragments": 306,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900556625.1",
                "gtdb_species": "s__Bacteroides sp900556625",
                "ani": 79.646,
                "matched_fragments": 176,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001314995.1",
                "gtdb_species": "s__Bacteroides ovatus",
                "ani": 79.6017,
                "matched_fragments": 325,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 126,
                "status": "-"
            },
            {
                "accession": "GCF_900155865.1",
                "gtdb_species": "s__Bacteroides bouchesdurhonensis",
                "ani": 78.764,
                "matched_fragments": 215,
                "total_fragments": 922,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.136,
        "cell_length": 0.217,
        "doubling_h": -0.095,
        "growth_tmp": 36.666,
        "optimum_tmp": 36.026,
        "optimum_ph": 6.997,
        "genome_size": 4818468.536,
        "gc_content": 43.414,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides sp947646015"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroides",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Bacteroides",
        "s__Bacteroides sp947646015",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Bacteroides",
        "Bacteroides",
        "sp947646015"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}