{ "type": "genome", "identifier": "GCA_900765705.1", "organism": "uncultured Faecalibacterium sp.", "title": "uncultured Faecalibacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_900765705.1", "bioproject": "PRJEB31003", "biosample": "SAMEA5280141", "wgs_master": "CAAFSR000000000.1", "refseq_category": "na", "taxid": "259315", "species_taxid": "259315", "organism_name": "uncultured Faecalibacterium sp.", "infraspecific_name": "", "isolate": "HGM13277", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/25", "asm_name": "SRS294968_37", "submitter": "DOE JGI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/765/705/GCA_900765705.1_SRS294968_37", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-25", "dateModified": "2020-06-25", "datePublished": "2020-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Faecalibacterium sp." ], "sample_taxid": [ "259315" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.808 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2841191", "Number of Sequences": "439", "Longest Sequences (bp)": "62650", "N50 (bp)": "8673", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.6", "Number of CDSs": "2364", "Average Protein Length": "291.8", "Coding Ratio (%)": "72.8", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Faecalibacterium prausnitzii", "strain": "strain=ATCC 27768", "accession": "GCA_003324185.1", "taxid": 853, "species_taxid": 853, "relation_to_type": "suspected-type", "validated": true, "ani": 91.9094, "matched_fragments": 525, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium hattorii", "strain": "strain=APC922/41-1", "accession": "GCA_003287455.1", "taxid": 2935520, "species_taxid": 2935520, "relation_to_type": "type", "validated": true, "ani": 84.64, "matched_fragments": 435, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium duncaniae", "strain": "strain=A2-165", "accession": "GCA_000162015.1", "taxid": 411483, "species_taxid": 411483, "relation_to_type": "type", "validated": true, "ani": 84.6188, "matched_fragments": 435, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium duncaniae", "strain": "strain=JCM 31915", "accession": "GCA_010509575.1", "taxid": 411483, "species_taxid": 411483, "relation_to_type": "type", "validated": true, "ani": 84.5494, "matched_fragments": 433, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 80.9992, "matched_fragments": 277, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subdoligranulum variabile", "strain": "strain=DSM 15176", "accession": "GCA_025152575.1", "taxid": 214851, "species_taxid": 214851, "relation_to_type": "type", "validated": true, "ani": 78.7262, "matched_fragments": 149, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 60.19, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900765705.1", "gtdb_species": "s__Faecalibacterium sp900765705", "ani": 100.0, "matched_fragments": 704, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.66", "min_intra_species_af": "0.66", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003324185.1", "gtdb_species": "s__Faecalibacterium prausnitzii", "ani": 91.9842, "matched_fragments": 522, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0612, "mean_intra_species_ani": "96.64", "min_intra_species_ani": "96.12", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 47, "status": "-" }, { "accession": "GCA_900772565.1", "gtdb_species": "s__Faecalibacterium sp900772565", "ani": 91.7287, "matched_fragments": 427, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003449675.1", "gtdb_species": "s__Faecalibacterium sp003449675", "ani": 91.7224, "matched_fragments": 342, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.56", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.74", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003287405.1", "gtdb_species": "s__Faecalibacterium prausnitzii_J", "ani": 91.6454, "matched_fragments": 496, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.32", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002550015.1", "gtdb_species": "s__Faecalibacterium prausnitzii_A", "ani": 91.6451, "matched_fragments": 493, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0612, "mean_intra_species_ani": "96.42", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_900765105.1", "gtdb_species": "s__Faecalibacterium sp900765105", "ani": 86.0478, "matched_fragments": 323, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900551435.1", "gtdb_species": "s__Faecalibacterium sp900551435", "ani": 82.7841, "matched_fragments": 312, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Faecalibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.15, "genome_size": 3117349.846, "gc_content": 56.239, "coding_genes": 2678.333, "rRNA16S_genes": null, "tRNA_genes": 63.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Ruminococcaceae", "g__Faecalibacterium", "s__Faecalibacterium sp900765705" ], "_genome_taxon": [ "uncultured", "Faecalibacterium", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Ruminococcaceae", "g__Faecalibacterium", "s__Faecalibacterium sp900765705", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Ruminococcaceae", "Faecalibacterium", "Faecalibacterium", "sp900765705" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }