{ "type": "genome", "identifier": "GCA_900769095.1", "organism": "Methanobacteriaceae archaeon", "title": "Methanobacteriaceae archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "DOE JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_900769095.1", "bioproject": "PRJEB31003", "biosample": "SAMEA5280050", "wgs_master": "CAAGFH000000000.1", "refseq_category": "na", "taxid": "2099680", "species_taxid": "2099680", "organism_name": "Methanobacteriaceae archaeon", "infraspecific_name": "", "isolate": "HGM00336", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/25", "asm_name": "SRS476193_44", "submitter": "DOE JGI", "gbrs_paired_asm": "GCF_900769095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/769/095/GCA_900769095.1_SRS476193_44", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-25", "dateModified": "2020-06-25", "datePublished": "2020-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobacteriaceae archaeon" ], "sample_taxid": [ "2099680" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Fiji" ], "sample_host_location_id": [], "data_size": "0.444 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 6.02, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1591883", "Number of Sequences": "293", "Longest Sequences (bp)": "20468", "N50 (bp)": "6894", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.5", "Number of CDSs": "1495", "Average Protein Length": "255.5", "Coding Ratio (%)": "72.0", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter gottschalkii", "strain": "strain=DSM 11977", "accession": "GCA_003814835.1", "taxid": 190974, "species_taxid": 190974, "relation_to_type": "type", "validated": true, "ani": 84.3295, "matched_fragments": 282, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter smithii", "strain": "strain=ATCC 35061; PS; DSMZ 861", "accession": "GCA_000016525.1", "taxid": 2173, "species_taxid": 2173, "relation_to_type": "type", "validated": true, "ani": 79.7253, "matched_fragments": 180, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter oralis", "strain": "strain=DSM 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39441, "species_taxid": 39441, "relation_to_type": "type", "validated": true, "ani": 76.3312, "matched_fragments": 67, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 6.02, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900769095.1", "gtdb_species": "s__Methanobrevibacter_A sp900769095", "ani": 99.9999, "matched_fragments": 373, "total_fragments": 378, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.68", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003814835.1", "gtdb_species": "s__Methanobrevibacter_A gottschalkii", "ani": 84.3295, "matched_fragments": 282, "total_fragments": 378, "gtdb_taxonomy": 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