{ "type": "genome", "identifier": "GCA_900769285.1", "organism": "Victivallales bacterium", "title": "Victivallales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "DOE JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_900769285.1", "bioproject": "PRJEB31003", "biosample": "SAMEA5278777", "wgs_master": "CAAGGB000000000.1", "refseq_category": "na", "taxid": "2212475", "species_taxid": "2212475", "organism_name": "Victivallales bacterium", "infraspecific_name": "", "isolate": "HGM23489", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/25", "asm_name": "SRS476193_67", "submitter": "DOE JGI", "gbrs_paired_asm": "GCF_900769285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/769/285/GCA_900769285.1_SRS476193_67", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-25", "dateModified": "2020-06-25", "datePublished": "2020-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Victivallales bacterium" ], "sample_taxid": [ "2212475" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Fiji" ], "sample_host_location_id": [], "data_size": "1.007 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3662993", "Number of Sequences": "346", "Longest Sequences (bp)": "45163", "N50 (bp)": "14067", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "2567", "Average Protein Length": "388.0", "Coding Ratio (%)": "81.6", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Victivallis lenta", "strain": "strain=BBE-744-WT-12", "accession": "GCA_009695545.1", "taxid": 2606640, "species_taxid": 2606640, "relation_to_type": "type", "validated": true, "ani": 75.373, "matched_fragments": 75, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 75.0317, "matched_fragments": 50, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides caeni", "strain": "strain=DSM 23134", "accession": "GCA_004912195.1", "taxid": 574700, "species_taxid": 574700, "relation_to_type": "type", "validated": true, "ani": 74.8576, "matched_fragments": 71, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.8563, "matched_fragments": 95, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=ATCC 6946", "accession": "GCA_900114845.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 74.8415, "matched_fragments": 92, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus telluris", "strain": "strain=DSM 45421", "accession": "GCA_900102745.1", "taxid": 1190417, "species_taxid": 1190417, "relation_to_type": "type", "validated": true, "ani": 74.8282, "matched_fragments": 82, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 74.8214, "matched_fragments": 83, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium siamense", "strain": "strain=DSM 45784", "accession": "GCA_014205275.1", "taxid": 795645, "species_taxid": 795645, "relation_to_type": "type", "validated": true, "ani": 74.7844, "matched_fragments": 129, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium krabiense", "strain": "strain=DSM 45790", "accession": "GCA_014200435.1", "taxid": 763782, "species_taxid": 763782, "relation_to_type": "type", "validated": true, "ani": 74.7754, "matched_fragments": 119, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium siamense", "strain": "strain=NBRC 107570", "accession": "GCA_016863415.1", "taxid": 795645, "species_taxid": 795645, "relation_to_type": "type", "validated": true, "ani": 74.738, "matched_fragments": 127, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 74.7102, "matched_fragments": 80, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plantibacter flavus", "strain": "strain=DSM 14012", "accession": "GCA_003755125.1", "taxid": 150123, "species_taxid": 150123, "relation_to_type": "type", "validated": true, "ani": 74.6918, "matched_fragments": 53, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plantibacter flavus", "strain": "strain=VKM Ac-2504", "accession": "GCA_900177615.1", "taxid": 150123, "species_taxid": 150123, "relation_to_type": "type", "validated": true, "ani": 74.6866, "matched_fragments": 54, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halogeometricum rufum", "strain": "strain=CGMCC 1.7736", "accession": "GCA_900112175.1", "taxid": 553469, "species_taxid": 553469, "relation_to_type": "type", "validated": true, "ani": 74.6131, "matched_fragments": 59, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900769285.1", "gtdb_species": "s__CAAGGB01 sp900769285", "ani": 100.0, "matched_fragments": 1031, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__CAAGGB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_902776645.1", "gtdb_species": "s__UBA1407 sp902776645", "ani": 76.9469, "matched_fragments": 182, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__UBA1407", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.32", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_001603055.1", "gtdb_species": "s__Lenti-02 sp001603055", "ani": 76.9081, "matched_fragments": 156, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__Lenti-02;g__Lenti-02", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016288215.1", "gtdb_species": "s__Tb-RUG-64 sp016288215", "ani": 76.7571, "matched_fragments": 103, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__Tb-RUG-64", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017535315.1", "gtdb_species": "s__RGIG3456 sp017535315", "ani": 76.7098, "matched_fragments": 85, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__RGIG3456", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017458805.1", "gtdb_species": "s__RGIG3456 sp017458805", "ani": 76.6271, "matched_fragments": 101, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__RGIG3456", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017554445.1", "gtdb_species": "s__UBA1407 sp017554445", "ani": 76.5185, "matched_fragments": 114, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__UBA1407", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017964325.1", "gtdb_species": "s__UBA1407 sp017964325", "ani": 76.4222, "matched_fragments": 103, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__UBA1407", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.33", "min_intra_species_ani": "96.33", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017548425.1", "gtdb_species": "s__UBA1407 sp017548425", "ani": 76.3785, "matched_fragments": 109, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__UBA1407", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903921725.1", "gtdb_species": "s__CAIXRA01 sp903921725", "ani": 76.2792, "matched_fragments": 80, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__CAITYL01;g__CAIXRA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019136035.1", "gtdb_species": "s__JAGVUW01 sp019136035", "ani": 76.1978, "matched_fragments": 133, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__Lenti-02;g__JAGVUW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003245525.1", "gtdb_species": "s__Lenti-02 sp003245525", "ani": 76.1804, "matched_fragments": 136, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__Lenti-02;g__Lenti-02", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017417585.1", "gtdb_species": "s__RGIG1601 sp017417585", "ani": 76.1355, "matched_fragments": 89, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__RGIG1601", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002305655.1", "gtdb_species": "s__UBA1407 sp002305655", "ani": 75.9335, "matched_fragments": 58, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__UBA1407", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002068325.1", "gtdb_species": "s__MVZH01 sp002068325", "ani": 75.8889, "matched_fragments": 107, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__MVZH01;g__MVZH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017431255.1", "gtdb_species": "s__RGIG2581 sp017431255", "ani": 75.8887, "matched_fragments": 64, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__RGIG2581", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016935045.1", "gtdb_species": "s__JAFGRS01 sp016935045", "ani": 75.8601, "matched_fragments": 69, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__Lenti-02;g__JAFGRS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903896595.1", "gtdb_species": "s__CAITYL01 sp903896595", "ani": 75.8148, "matched_fragments": 68, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__CAITYL01;g__CAITYL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903894975.1", "gtdb_species": "s__CAITSE01 sp903894975", "ani": 75.797, "matched_fragments": 65, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__CAITYL01;g__CAITSE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002070945.1", "gtdb_species": "s__JAAZKI01 sp002070945", "ani": 75.7485, "matched_fragments": 81, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__UBA1407;f__UBA1407;g__JAAZKI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002841945.1", "gtdb_species": "s__PHBI01 sp002841945", "ani": 74.9313, "matched_fragments": 126, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA9042;o__PHBI01;f__PHBI01;g__PHBI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000964525.1", "gtdb_species": "s__Anaeromyxobacter sp000964525", "ani": 74.9025, "matched_fragments": 94, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000022145.1", "gtdb_species": "s__Anaeromyxobacter dehalogenans", "ani": 74.8454, "matched_fragments": 98, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__Anaeromyxobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.302, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 5247392.0, "gc_content": 59.4, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Lentisphaeria", "o__Oligosphaerales", "f__Oligosphaeraceae", "g__CAAGGB01", "s__CAAGGB01 sp900769285" ], "_genome_taxon": [ "Victivallales", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Lentisphaeria", "o__Oligosphaerales", "f__Oligosphaeraceae", "g__CAAGGB01", "s__CAAGGB01 sp900769285", "Bacteria", "Verrucomicrobiota", "Lentisphaeria", "Oligosphaerales", "Oligosphaeraceae", "CAAGGB01", "CAAGGB01", "sp900769285" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }