{
    "type": "genome",
    "identifier": "GCA_900770075.1",
    "organism": "Spirochaetia bacterium",
    "title": "Spirochaetia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_900770075.1",
        "bioproject": "PRJEB31003",
        "biosample": "SAMEA5280192",
        "wgs_master": "CAAGIZ000000000.1",
        "refseq_category": "na",
        "taxid": "2053615",
        "species_taxid": "2053615",
        "organism_name": "Spirochaetia bacterium",
        "infraspecific_name": "",
        "isolate": "HGM23193",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/25",
        "asm_name": "SRS476289_69",
        "submitter": "DOE JGI",
        "gbrs_paired_asm": "GCF_900770075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/770/075/GCA_900770075.1_SRS476289_69",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-25",
    "dateModified": "2020-06-25",
    "datePublished": "2020-06-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spirochaetia bacterium"
        ],
        "sample_taxid": [
            "2053615"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Fiji"
        ],
        "sample_host_location_id": [],
        "data_size": "0.663 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.41,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2346376",
        "Number of Sequences": "258",
        "Longest Sequences (bp)": "45689",
        "N50 (bp)": "14656",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.9",
        "Number of CDSs": "1777",
        "Average Protein Length": "343.1",
        "Coding Ratio (%)": "77.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Treponema berlinense",
                "strain": "strain=ATCC BAA-909",
                "accession": "GCA_900167025.1",
                "taxid": 225004,
                "species_taxid": 225004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.767,
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                "total_fragments": 652,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema ruminis",
                "strain": "strain=DSM 103462",
                "accession": "GCA_014201975.1",
                "taxid": 744515,
                "species_taxid": 744515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8404,
                "matched_fragments": 62,
                "total_fragments": 652,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.41,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900770075.1",
                "gtdb_species": "s__Treponema_D sp900770075",
                "ani": 100.0,
                "matched_fragments": 646,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
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                "gtdb_species": "s__Treponema_D berlinense",
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                "matched_fragments": 370,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002477955.1",
                "gtdb_species": "s__Treponema_D sp002477955",
                "ani": 79.1515,
                "matched_fragments": 312,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002392405.1",
                "gtdb_species": "s__Treponema_D sp002392405",
                "ani": 77.4317,
                "matched_fragments": 112,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900497595.1",
                "gtdb_species": "s__Treponema_D pectinovorum",
                "ani": 77.3262,
                "matched_fragments": 105,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.00",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016283615.1",
                "gtdb_species": "s__Treponema_D sp016283615",
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                "matched_fragments": 117,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016297415.1",
                "gtdb_species": "s__Treponema_D sp016297415",
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                "matched_fragments": 103,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002404895.1",
                "gtdb_species": "s__Treponema_D sp002404895",
                "ani": 76.5122,
                "matched_fragments": 71,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017470605.1",
                "gtdb_species": "s__Treponema_D sp017470605",
                "ani": 75.8683,
                "matched_fragments": 52,
                "total_fragments": 652,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp900770075"
    ],
    "_genome_taxon": [
        "Spirochaetia",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp900770075",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "Treponemataceae",
        "Treponema",
        "D",
        "Treponema",
        "D",
        "sp900770075"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}