{ "type": "genome", "identifier": "GCA_902406345.1", "organism": "uncultured Megasphaera sp.", "title": "uncultured Megasphaera sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902406345.1", "bioproject": "PRJEB33885", "biosample": "SAMEA5853796", "wgs_master": "CABPDK000000000.1", "refseq_category": "na", "taxid": "165188", "species_taxid": "165188", "organism_name": "uncultured Megasphaera sp.", "infraspecific_name": "", "isolate": "MGYG-HGUT-04289", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/14", "asm_name": "UHGG_MGYG-HGUT-04289", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/406/345/GCA_902406345.1_UHGG_MGYG-HGUT-04289", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-14", "dateModified": "2019-08-14", "datePublished": "2019-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Megasphaera sp." ], "sample_taxid": [ "165188" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.480 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1684653", "Number of Sequences": "14", "Longest Sequences (bp)": "590078", "N50 (bp)": "174746", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.4", "Number of CDSs": "1600", "Average Protein Length": "317.0", "Coding Ratio (%)": "90.3", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "'Megasphaera vaginalis' Bordigoni et al. 2020", "strain": "strain=Marseille-P4857", "accession": "GCA_900240295.1", "taxid": 2045301, "species_taxid": 2045301, "relation_to_type": "type", "validated": true, "ani": 78.2474, "matched_fragments": 90, "total_fragments": 555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colibacter massiliensis", "strain": "strain=Marseille-P2911", "accession": "GCA_900095855.1", "taxid": 1852379, "species_taxid": 1852379, "relation_to_type": "type", "validated": true, "ani": 78.15, "matched_fragments": 165, "total_fragments": 555, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megasphaera 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