{ "type": "genome", "identifier": "GCA_902461025.1", "organism": "uncultured Streptococcus sp.", "title": "uncultured Streptococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902461025.1", "bioproject": "PRJEB33885", "biosample": "SAMEA5849800", "wgs_master": "CABPWC000000000.1", "refseq_category": "na", "taxid": "83427", "species_taxid": "83427", "organism_name": "uncultured Streptococcus sp.", "infraspecific_name": "", "isolate": "MGYG-HGUT-00298", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/13", "asm_name": "UHGG-TPA_MGYG-HGUT-00298", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/025/GCA_902461025.1_UHGG-TPA_MGYG-HGUT-00298", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-13", "dateModified": "2021-03-13", "datePublished": "2021-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Streptococcus sp." ], "sample_taxid": [ "83427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.465 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.61, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1627980", "Number of Sequences": "160", "Longest Sequences (bp)": "65559", "N50 (bp)": "14058", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "1475", "Average Protein Length": "298.2", "Coding Ratio (%)": "81.1", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus infantis", "strain": "strain=ATCC 700779", "accession": "GCA_000187465.1", "taxid": 68892, "species_taxid": 68892, "relation_to_type": "suspected-type", "validated": true, "ani": 92.5986, "matched_fragments": 391, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantis", "strain": "strain=ATCC 700779", "accession": "GCA_000260755.1", "taxid": 68892, "species_taxid": 68892, "relation_to_type": "suspected-type", "validated": true, "ani": 92.5436, "matched_fragments": 382, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus timonensis", "strain": "strain=Marseille-P2915", "accession": "GCA_900095845.1", "taxid": 1852387, "species_taxid": 1852387, "relation_to_type": "type", "validated": true, "ani": 88.6164, "matched_fragments": 371, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus peroris", "strain": "strain=ATCC 700780", "accession": "GCA_000187585.1", "taxid": 68891, "species_taxid": 68891, "relation_to_type": "type", "validated": true, "ani": 87.9932, "matched_fragments": 367, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000148565.2", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 83.0296, "matched_fragments": 302, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 83.0233, "matched_fragments": 308, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000164095.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 83.0144, "matched_fragments": 305, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 82.8284, "matched_fragments": 301, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 82.5517, "matched_fragments": 313, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 82.4233, "matched_fragments": 301, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=ATCC BAA-960", "accession": "GCA_000257825.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 82.3251, "matched_fragments": 263, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 82.2186, "matched_fragments": 274, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 82.0901, "matched_fragments": 304, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 82.0482, "matched_fragments": 287, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=CCUG 49455", "accession": "GCA_002087075.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 82.0149, "matched_fragments": 293, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8287, "matched_fragments": 86, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 77.4488, "matched_fragments": 70, "total_fragments": 458, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 73.61, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_018499575.1", "gtdb_species": "s__Streptococcus infantis_K", "ani": 93.7997, "matched_fragments": 412, "total_fragments": 458, 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