{
    "type": "genome",
    "identifier": "GCA_902461155.1",
    "organism": "uncultured Pygmaiobacter sp.",
    "title": "uncultured Pygmaiobacter sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902461155.1",
        "bioproject": "PRJEB33885",
        "biosample": "SAMEA5849821",
        "wgs_master": "CABPWX000000000.1",
        "refseq_category": "na",
        "taxid": "1929308",
        "species_taxid": "1929308",
        "organism_name": "uncultured Pygmaiobacter sp.",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-00319",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/30",
        "asm_name": "UHGG-TPA_MGYG-HGUT-00319",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/155/GCA_902461155.1_UHGG-TPA_MGYG-HGUT-00319",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-30",
    "dateModified": "2021-03-30",
    "datePublished": "2021-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Pygmaiobacter sp."
        ],
        "sample_taxid": [
            "1929308"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.747 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 63.89,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2608342",
        "Number of Sequences": "300",
        "Longest Sequences (bp)": "53603",
        "N50 (bp)": "12476",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.7",
        "Number of CDSs": "2279",
        "Average Protein Length": "287.0",
        "Coding Ratio (%)": "75.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pygmaiobacter massiliensis",
                "strain": "strain=Marseille-P3336",
                "accession": "GCA_900199435.1",
                "taxid": 1917873,
                "species_taxid": 1917873,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0712,
                "matched_fragments": 662,
                "total_fragments": 710,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 63.89,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900199435.1",
                "gtdb_species": "s__Pygmaiobacter massiliensis",
                "ani": 97.0712,
                "matched_fragments": 662,
                "total_fragments": 710,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Pygmaiobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014287275.1",
                "gtdb_species": "s__Pygmaiobacter sp014287275",
                "ani": 76.7958,
                "matched_fragments": 53,
                "total_fragments": 710,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Pygmaiobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Pygmaiobacter",
        "s__Pygmaiobacter massiliensis"
    ],
    "_genome_taxon": [
        "uncultured",
        "Pygmaiobacter",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Pygmaiobacter",
        "s__Pygmaiobacter massiliensis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Pygmaiobacter",
        "Pygmaiobacter",
        "massiliensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}