{
    "type": "genome",
    "identifier": "GCA_902461185.1",
    "organism": "uncultured Haemophilus sp.",
    "title": "uncultured Haemophilus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902461185.1",
        "bioproject": "PRJEB33885",
        "biosample": "SAMEA5849819",
        "wgs_master": "CABPXD000000000.1",
        "refseq_category": "na",
        "taxid": "237779",
        "species_taxid": "237779",
        "organism_name": "uncultured Haemophilus sp.",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-00317",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/30",
        "asm_name": "UHGG-TPA_MGYG-HGUT-00317",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/185/GCA_902461185.1_UHGG-TPA_MGYG-HGUT-00317",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-30",
    "dateModified": "2021-03-30",
    "datePublished": "2021-03-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Haemophilus sp."
        ],
        "sample_taxid": [
            "237779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.607 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2151510",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "319751",
        "N50 (bp)": "152364",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.2",
        "Number of CDSs": "1996",
        "Average Protein Length": "323.3",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "5",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=NCTC 7857",
                "accession": "GCA_900450845.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.532,
                "matched_fragments": 627,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=FDAARGOS_1000",
                "accession": "GCA_016127215.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.5202,
                "matched_fragments": 629,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=ATCC 33392",
                "accession": "GCA_000746485.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.5071,
                "matched_fragments": 620,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=ATCC 33392",
                "accession": "GCA_000191405.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.4706,
                "matched_fragments": 631,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus pittmaniae",
                "strain": "strain=NCTC13334",
                "accession": "GCA_900186995.1",
                "taxid": 249188,
                "species_taxid": 249188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7263,
                "matched_fragments": 347,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haemophilus seminalis",
                "strain": "strain=SZY H1",
                "accession": "GCA_006384255.1",
                "taxid": 2582921,
                "species_taxid": 2582921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2736,
                "matched_fragments": 352,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rodentibacter haemolyticus",
                "strain": "strain=DSM 111151",
                "accession": "GCA_015356115.1",
                "taxid": 2778911,
                "species_taxid": 2778911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9917,
                "matched_fragments": 319,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rodentibacter heidelbergensis",
                "strain": "strain=Ac69",
                "accession": "GCA_002000125.1",
                "taxid": 1908258,
                "species_taxid": 1908258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5599,
                "matched_fragments": 286,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000191405.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae",
                "ani": 95.4706,
                "matched_fragments": 631,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.44",
                "min_intra_species_ani": "95.10",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 33,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003252755.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae_N",
                "ani": 94.4629,
                "matched_fragments": 588,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.46",
                "min_intra_species_ani": "95.02",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_905214375.1",
                "gtdb_species": "s__Haemophilus_D sp905214375",
                "ani": 94.2701,
                "matched_fragments": 502,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900756155.1",
                "gtdb_species": "s__Haemophilus_D sp900756155",
                "ani": 93.9533,
                "matched_fragments": 573,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.08",
                "min_intra_species_ani": "95.08",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001815355.1",
                "gtdb_species": "s__Haemophilus_D sp001815355",
                "ani": 93.9388,
                "matched_fragments": 569,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.35",
                "min_intra_species_ani": "95.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_905215245.1",
                "gtdb_species": "s__Haemophilus_D sp905215245",
                "ani": 93.8957,
                "matched_fragments": 407,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.18",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000210895.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae_A",
                "ani": 93.8411,
                "matched_fragments": 585,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.08",
                "min_intra_species_ani": "95.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014931275.1",
                "gtdb_species": "s__Haemophilus_D sp900755445",
                "ani": 93.7997,
                "matched_fragments": 585,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.096,
                "mean_intra_species_ani": "96.11",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_905207935.1",
                "gtdb_species": "s__Haemophilus_D sp905207935",
                "ani": 93.7701,
                "matched_fragments": 486,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003252725.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae_L",
                "ani": 93.7489,
                "matched_fragments": 587,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.33",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003253005.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae_M",
                "ani": 93.716,
                "matched_fragments": 576,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.35",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_001679485.1",
                "gtdb_species": "s__Haemophilus_D sp001679485",
                "ani": 93.5754,
                "matched_fragments": 573,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.096,
                "mean_intra_species_ani": "95.82",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900756875.1",
                "gtdb_species": "s__Haemophilus_D sp900756875",
                "ani": 93.3374,
                "matched_fragments": 452,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.91",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905205995.1",
                "gtdb_species": "s__Haemophilus_D sp905205995",
                "ani": 93.2908,
                "matched_fragments": 546,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018381425.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae_O",
                "ani": 93.036,
                "matched_fragments": 350,
                "total_fragments": 708,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.89",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.481,
        "cell_length": 0.012,
        "doubling_h": -0.018,
        "growth_tmp": 36.571,
        "optimum_tmp": 36.436,
        "optimum_ph": 6.75,
        "genome_size": 2054106.422,
        "gc_content": 39.271,
        "coding_genes": 1822.685,
        "rRNA16S_genes": 6.018,
        "tRNA_genes": 56.355,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.23,
        "anaerobic_respiration": 0.076,
        "aerobic_respiration": 0.692,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Pasteurellaceae",
        "g__Haemophilus_D",
        "s__Haemophilus_D parainfluenzae"
    ],
    "_genome_taxon": [
        "uncultured",
        "Haemophilus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Pasteurellaceae",
        "g__Haemophilus_D",
        "s__Haemophilus_D parainfluenzae",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Pasteurellaceae",
        "Haemophilus",
        "D",
        "Haemophilus",
        "D",
        "parainfluenzae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}