{ "type": "genome", "identifier": "GCA_902461295.1", "organism": "uncultured Eggerthella sp.", "title": "uncultured Eggerthella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902461295.1", "bioproject": "PRJEB33885", "biosample": "SAMEA5849806", "wgs_master": "CABPWO000000000.1", "refseq_category": "na", "taxid": "293422", "species_taxid": "293422", "organism_name": "uncultured Eggerthella sp.", "infraspecific_name": "", "isolate": "MGYG-HGUT-00304", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/13", "asm_name": "UHGG-TPA_MGYG-HGUT-00304", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/295/GCA_902461295.1_UHGG-TPA_MGYG-HGUT-00304", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-13", "dateModified": "2021-03-13", "datePublished": "2021-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Eggerthella sp." ], "sample_taxid": [ "293422" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.461 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1613120", "Number of Sequences": "28", "Longest Sequences (bp)": "204647", "N50 (bp)": "126164", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.1", "Number of CDSs": "1416", "Average Protein Length": "332.3", "Coding Ratio (%)": "87.5", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Raoultibacter massiliensis", "strain": "strain=Marseille-P2849", "accession": "GCA_900199545.1", "taxid": 1852371, "species_taxid": 1852371, "relation_to_type": "type", "validated": true, "ani": 77.2447, "matched_fragments": 60, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_003339975.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.121, "matched_fragments": 63, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.1207, "matched_fragments": 64, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 77.0538, "matched_fragments": 64, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_000024265.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 76.9527, "matched_fragments": 65, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultibacter timonensis", "strain": "strain=Marseille-P3277", "accession": "GCA_900240215.1", "taxid": 1907662, "species_taxid": 1907662, "relation_to_type": "type", "validated": true, "ani": 76.8331, "matched_fragments": 60, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 76.4071, "matched_fragments": 62, "total_fragments": 524, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900542525.1", "gtdb_species": "s__CAG-1427 sp900542525", "ani": 99.9882, "matched_fragments": 515, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAG-1427", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_900538545.1", "gtdb_species": "s__CAG-1427 sp900538545", "ani": 90.368, "matched_fragments": 474, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAG-1427", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.97", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_000435675.1", "gtdb_species": "s__CAG-1427 sp000435675", "ani": 90.0435, "matched_fragments": 461, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAG-1427", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.82", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_900540345.1", "gtdb_species": "s__CAG-1427 sp900540345", "ani": 79.1303, "matched_fragments": 237, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAG-1427", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900753095.1", "gtdb_species": "s__CAG-1427 sp900753095", "ani": 77.5216, "matched_fragments": 59, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAG-1427", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900199545.1", "gtdb_species": "s__Raoultibacter massiliensis", "ani": 77.2447, "matched_fragments": 60, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Raoultibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024265.1", "gtdb_species": "s__Eggerthella lenta", "ani": 76.9928, "matched_fragments": 64, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 72, "status": "-" }, { "accession": "GCA_900754955.1", "gtdb_species": "s__CAAEEV01 sp900754955", "ani": 76.3275, "matched_fragments": 51, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": -0.699, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 3636528.0, "gc_content": 64.221, "coding_genes": 3033.75, "rRNA16S_genes": 3.0, "tRNA_genes": 48.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__Anaerotardibacter", "s__Anaerotardibacter sp900542525" ], "_genome_taxon": [ "uncultured", "Eggerthella", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__Anaerotardibacter", "s__Anaerotardibacter sp900542525", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Eggerthellaceae", "Anaerotardibacter", "Anaerotardibacter", "sp900542525" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }