{
    "type": "genome",
    "identifier": "GCA_902461355.1",
    "organism": "uncultured Rothia sp.",
    "title": "uncultured Rothia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902461355.1",
        "bioproject": "PRJEB33885",
        "biosample": "SAMEA5849828",
        "wgs_master": "CABPXP000000000.1",
        "refseq_category": "na",
        "taxid": "316088",
        "species_taxid": "316088",
        "organism_name": "uncultured Rothia sp.",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-00326",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/09",
        "asm_name": "UHGG-TPA_MGYG-HGUT-00326",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/355/GCA_902461355.1_UHGG-TPA_MGYG-HGUT-00326",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-09",
    "dateModified": "2021-04-09",
    "datePublished": "2021-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Rothia sp."
        ],
        "sample_taxid": [
            "316088"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.664 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2307278",
        "Number of Sequences": "225",
        "Longest Sequences (bp)": "108121",
        "N50 (bp)": "14735",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.5",
        "Number of CDSs": "1965",
        "Average Protein Length": "304.0",
        "Coding Ratio (%)": "77.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Rothia terrae",
                "strain": "strain=LMG 23708",
                "accession": "GCA_012396615.1",
                "taxid": 396015,
                "species_taxid": 396015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6106,
                "matched_fragments": 626,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rothia aerolata",
                "strain": "strain=CCM 8669",
                "accession": "GCA_014635585.1",
                "taxid": 1812262,
                "species_taxid": 1812262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7848,
                "matched_fragments": 158,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia mucilaginosa",
                "strain": "strain=ATCC 25296",
                "accession": "GCA_000175615.1",
                "taxid": 43675,
                "species_taxid": 43675,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.2078,
                "matched_fragments": 120,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=ATCC 17931",
                "accession": "GCA_000164695.2",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7322,
                "matched_fragments": 69,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=NCTC10917",
                "accession": "GCA_900455895.1",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7322,
                "matched_fragments": 69,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria carniphila",
                "strain": "strain=CCM 132",
                "accession": "GCA_004136555.1",
                "taxid": 262208,
                "species_taxid": 262208,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6289,
                "matched_fragments": 57,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_012396615.1",
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                "matched_fragments": 626,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016924835.1",
                "gtdb_species": "s__Rothia sp016924835",
                "ani": 79.5266,
                "matched_fragments": 238,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014635585.1",
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                "ani": 78.841,
                "matched_fragments": 156,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002418375.1",
                "gtdb_species": "s__Rothia sp002418375",
                "ani": 78.2327,
                "matched_fragments": 142,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.17",
                "min_intra_species_ani": "96.17",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015265375.1",
                "gtdb_species": "s__Rothia sp015265375",
                "ani": 78.1481,
                "matched_fragments": 111,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.30",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001061665.1",
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                "matched_fragments": 93,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_001548235.1",
                "gtdb_species": "s__Rothia mucilaginosa_B",
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                "matched_fragments": 122,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.72",
                "min_intra_species_ani": "95.51",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019115985.1",
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                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004569295.1",
                "gtdb_species": "s__Rothia nasimurium_B",
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                "matched_fragments": 154,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001808955.1",
                "gtdb_species": "s__Rothia sp001808955",
                "ani": 78.0171,
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                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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                "mean_intra_species_ani": "96.04",
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            },
            {
                "accession": "GCF_014217215.1",
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                "mean_intra_species_ani": "98.36",
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                "status": "-"
            },
            {
                "accession": "GCF_002087015.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_901875305.1",
                "gtdb_species": "s__Rothia sp902373285",
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                "mean_intra_species_ani": "97.53",
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                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCF_004136555.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
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                "mean_intra_species_ani": "97.73",
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                "min_intra_species_af": "0.89",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.118,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 32.333,
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        "sporulation": 0.0,
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        "bacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
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        "g__Rothia",
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    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
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        "c__Actinomycetes",
        "o__Actinomycetales",
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        "g__Rothia",
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        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Micrococcaceae",
        "Rothia",
        "Rothia",
        "terrae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}