{ "type": "genome", "identifier": "GCA_902461385.1", "organism": "uncultured Neisseria sp.", "title": "uncultured Neisseria sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902461385.1", "bioproject": "PRJEB33885", "biosample": "SAMEA5849831", "wgs_master": "CABPXQ000000000.1", "refseq_category": "na", "taxid": "237778", "species_taxid": "237778", "organism_name": "uncultured Neisseria sp.", "infraspecific_name": "", "isolate": "MGYG-HGUT-00329", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/13", "asm_name": "UHGG-TPA_MGYG-HGUT-00329", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/385/GCA_902461385.1_UHGG-TPA_MGYG-HGUT-00329", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-13", "dateModified": "2021-03-13", "datePublished": "2021-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Neisseria sp." ], "sample_taxid": [ "237778" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.423 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 53.7, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1481172", "Number of Sequences": "415", "Longest Sequences (bp)": "19425", "N50 (bp)": "3998", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "1132", "Average Protein Length": "255.8", "Coding Ratio (%)": "58.6", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 94.929, "matched_fragments": 239, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 93.5426, "matched_fragments": 232, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=ATCC 13120", 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"type", "validated": true, "ani": 84.8407, "matched_fragments": 164, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=FDAARGOS_871", "accession": "GCA_016028715.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 84.6887, "matched_fragments": 157, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 84.4298, "matched_fragments": 167, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2219, "matched_fragments": 203, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 83.9747, "matched_fragments": 197, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 83.9622, "matched_fragments": 195, "total_fragments": 256, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 53.7, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013267835.1", "gtdb_species": "s__Neisseria sp000186165", "ani": 96.4418, "matched_fragments": 236, "total_fragments": 256, 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