{
    "type": "genome",
    "identifier": "GCA_902461515.1",
    "organism": "uncultured Oxalobacter sp.",
    "title": "uncultured Oxalobacter sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902461515.1",
        "bioproject": "PRJEB33885",
        "biosample": "SAMEA5849844",
        "wgs_master": "CABPYC000000000.1",
        "refseq_category": "na",
        "taxid": "337245",
        "species_taxid": "337245",
        "organism_name": "uncultured Oxalobacter sp.",
        "infraspecific_name": "",
        "isolate": "MGYG-HGUT-00342",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/17",
        "asm_name": "UHGG-TPA_MGYG-HGUT-00342",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/515/GCA_902461515.1_UHGG-TPA_MGYG-HGUT-00342",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-17",
    "dateModified": "2021-03-17",
    "datePublished": "2021-03-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Oxalobacter sp."
        ],
        "sample_taxid": [
            "337245"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden"
        ],
        "sample_host_location_id": [],
        "data_size": "0.284 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.81,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "990972",
        "Number of Sequences": "290",
        "Longest Sequences (bp)": "15930",
        "N50 (bp)": "3954",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.0",
        "Number of CDSs": "662",
        "Average Protein Length": "272.5",
        "Coding Ratio (%)": "54.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "18",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 50.81,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900760095.1",
                "gtdb_species": "s__Oxalobacter sp900760095",
                "ani": 79.5056,
                "matched_fragments": 94,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Oxalobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002127965.1",
                "gtdb_species": "s__Oxalobacter formigenes",
                "ani": 77.92,
                "matched_fragments": 85,
                "total_fragments": 157,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Oxalobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 29.5,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2463878.833,
        "gc_content": 50.375,
        "coding_genes": 2217.667,
        "rRNA16S_genes": 1.5,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Oxalobacter",
        "s__Oxalobacter sp934270705"
    ],
    "_genome_taxon": [
        "uncultured",
        "Oxalobacter",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Oxalobacter",
        "s__Oxalobacter sp934270705",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Oxalobacter",
        "Oxalobacter",
        "sp934270705"
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}