{
    "type": "genome",
    "identifier": "GCA_902528165.1",
    "organism": "uncultured Litorivicinus sp.",
    "title": "uncultured Litorivicinus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902528165.1",
        "bioproject": "PRJEB33281",
        "biosample": "SAMEA6070578",
        "wgs_master": "CABZRL000000000.1",
        "refseq_category": "na",
        "taxid": "1587531",
        "species_taxid": "1587531",
        "organism_name": "uncultured Litorivicinus sp.",
        "infraspecific_name": "",
        "isolate": "AG-896-J04",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/28",
        "asm_name": "AG-896-J04",
        "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/528/165/GCA_902528165.1_AG-896-J04",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-28",
    "dateModified": "2019-10-28",
    "datePublished": "2019-10-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Litorivicinus sp."
        ],
        "sample_taxid": [
            "1587531"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.468 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1622917",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "166779",
        "N50 (bp)": "96547",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.2",
        "Number of CDSs": "1609",
        "Average Protein Length": "294.8",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009886945.1",
                "gtdb_species": "s__HIMB30 sp002691485",
                "ani": 95.7108,
                "matched_fragments": 313,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.88",
                "min_intra_species_ani": "95.73",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000227525.2",
                "gtdb_species": "s__HIMB30 sp000227525",
                "ani": 79.0669,
                "matched_fragments": 144,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_008087055.1",
                "gtdb_species": "s__HIMB30 sp008087055",
                "ani": 79.0617,
                "matched_fragments": 176,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010024125.1",
                "gtdb_species": "s__HIMB30 sp010024125",
                "ani": 78.9337,
                "matched_fragments": 137,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902558075.1",
                "gtdb_species": "s__HIMB30 sp902558075",
                "ani": 78.6464,
                "matched_fragments": 109,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002705325.1",
                "gtdb_species": "s__HIMB30 sp002705325",
                "ani": 78.4702,
                "matched_fragments": 112,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002705795.1",
                "gtdb_species": "s__HIMB30 sp002705795",
                "ani": 77.5322,
                "matched_fragments": 96,
                "total_fragments": 520,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Litoricolaceae;g__HIMB30",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Litorivicinaceae",
        "g__HIMB30",
        "s__HIMB30 sp902528165"
    ],
    "_genome_taxon": [
        "uncultured",
        "Litorivicinus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Litorivicinaceae",
        "g__HIMB30",
        "s__HIMB30 sp902528165",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Litorivicinaceae",
        "HIMB30",
        "HIMB30",
        "sp902528165"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}