{ "type": "genome", "identifier": "GCA_902528915.1", "organism": "uncultured SAR86 cluster bacterium", "title": "uncultured SAR86 cluster bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902528915.1", "bioproject": "PRJEB33281", "biosample": "SAMEA6078074", "wgs_master": "CABZUG000000000.1", "refseq_category": "na", "taxid": "648174", "species_taxid": "648174", "organism_name": "uncultured SAR86 cluster bacterium", "infraspecific_name": "", "isolate": "AG-337-P23", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/28", "asm_name": "AG-337-P23", "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/528/915/GCA_902528915.1_AG-337-P23", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-28", "dateModified": "2019-10-28", "datePublished": "2019-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured SAR86 cluster bacterium" ], "sample_taxid": [ "648174" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.126 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "446624", "Number of Sequences": "37", "Longest Sequences (bp)": "66313", "N50 (bp)": "23035", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.6", "Number of CDSs": "415", "Average Protein Length": "304.0", "Coding Ratio (%)": "84.8", "Number of rRNAs": "3", "Number of tRNAs": "16", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902614235.1", "gtdb_species": "s__AG-339-G14 sp902614235", "ani": 95.3222, "matched_fragments": 117, "total_fragments": 130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__AG-339-G14;g__AG-339-G14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 7, "status": "inconclusive" }, { "accession": "GCA_902523885.1", "gtdb_species": "s__AG-339-G14 sp902523885", "ani": 95.0491, "matched_fragments": 121, "total_fragments": 130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__AG-339-G14;g__AG-339-G14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "inconclusive" }, { "accession": "GCA_902525735.1", "gtdb_species": "s__AG-339-G14 sp902525735", "ani": 94.4022, "matched_fragments": 122, "total_fragments": 130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__AG-339-G14;g__AG-339-G14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902635045.1", "gtdb_species": "s__AG-339-G14 sp902635045", "ani": 88.5449, "matched_fragments": 109, "total_fragments": 130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__AG-339-G14;g__AG-339-G14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902524805.1", "gtdb_species": "s__AG-339-G14 sp902524805", "ani": 83.0862, "matched_fragments": 86, "total_fragments": 130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__AG-339-G14;g__AG-339-G14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902522825.1", "gtdb_species": "s__AG-339-G14 sp902522825", "ani": 80.7622, "matched_fragments": 85, "total_fragments": 130, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__AG-339-G14;g__AG-339-G14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__SAR86", "f__AG-339-G14", "g__CASICS01", "s__CASICS01 sp902614235" ], "_genome_taxon": [ "uncultured", "SAR86", "cluster", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__SAR86", "f__AG-339-G14", "g__CASICS01", "s__CASICS01 sp902614235", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "SAR86", "AG-339-G14", "CASICS01", "CASICS01", "sp902614235" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }