{
    "type": "genome",
    "identifier": "GCA_902529095.1",
    "organism": "uncultured prokaryote",
    "title": "uncultured prokaryote",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902529095.1",
        "bioproject": "PRJEB33281",
        "biosample": "SAMEA6070625",
        "wgs_master": "CABZUT000000000.1",
        "refseq_category": "na",
        "taxid": "198431",
        "species_taxid": "198431",
        "organism_name": "uncultured prokaryote",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/28",
        "asm_name": "AG-896-M11",
        "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/529/095/GCA_902529095.1_AG-896-M11",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-28",
    "dateModified": "2019-10-28",
    "datePublished": "2019-10-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured prokaryote"
        ],
        "sample_taxid": [
            "198431"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.166 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 65.6,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "597567",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "200134",
        "N50 (bp)": "39133",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.6",
        "Number of CDSs": "596",
        "Average Protein Length": "298.8",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "16",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Candidatus Pelagibacter ubique",
                "strain": "strain=HTCC1062",
                "accession": "GCA_000012345.1",
                "taxid": 198252,
                "species_taxid": 198252,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "total_fragments": 181,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 65.6,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_902597695.1",
                "gtdb_species": "s__Pelagibacter sp902597695",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902612325.1",
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                "matched_fragments": 155,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.45",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902560185.1",
                "gtdb_species": "s__Pelagibacter sp902560185",
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                "matched_fragments": 123,
                "total_fragments": 181,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.62",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.64",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_003213155.1",
                "gtdb_species": "s__Pelagibacter sp003213155",
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                "matched_fragments": 150,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_902541515.1",
                "gtdb_species": "s__Pelagibacter sp902541515",
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                "total_fragments": 181,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.47",
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                "num_clustered_genomes": 2,
                "status": "-"
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                "total_fragments": 181,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "total_fragments": 181,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003212275.1",
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                "matched_fragments": 143,
                "total_fragments": 181,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
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            },
            {
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                "matched_fragments": 126,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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                "mean_intra_species_ani": "96.80",
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                "status": "-"
            },
            {
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                "gtdb_species": "s__Pelagibacter sp902631255",
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                "matched_fragments": 89,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_003282055.1",
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            },
            {
                "accession": "GCA_902529645.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
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        "rRNA16S_genes": null,
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        "facultative_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "g__Pelagibacter",
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    ],
    "_genome_taxon": [
        "uncultured",
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        "p__Pseudomonadota",
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        "f__Pelagibacteraceae",
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        "Pseudomonadota",
        "Alphaproteobacteria",
        "Pelagibacterales",
        "Pelagibacteraceae",
        "Pelagibacter",
        "s",
        "",
        ""
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}