{ "type": "genome", "identifier": "GCA_902614945.1", "organism": "uncultured Alphaproteobacteria bacterium", "title": "uncultured Alphaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902614945.1", "bioproject": "PRJEB33281", "biosample": "SAMEA6074716", "wgs_master": "CACMNE000000000.1", "refseq_category": "na", "taxid": "91750", "species_taxid": "91750", "organism_name": "uncultured Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "AG-919-D04", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/07", "asm_name": "AG-919-D04", "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/614/945/GCA_902614945.1_AG-919-D04", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-07", "dateModified": "2019-11-07", "datePublished": "2019-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alphaproteobacteria bacterium" ], "sample_taxid": [ "91750" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.451 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1611502", "Number of Sequences": "92", "Longest Sequences (bp)": "97123", "N50 (bp)": "40967", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.3", "Number of CDSs": "1477", "Average Protein Length": "304.8", "Coding Ratio (%)": "83.8", "Number of rRNAs": "3", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902611605.1", "gtdb_species": "s__CACIIZ01 sp902611605", "ani": 96.3471, "matched_fragments": 249, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CACIIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.35", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.51", "min_intra_species_af": "0.51", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_902570265.1", "gtdb_species": "s__CACIIZ01 sp902570265", "ani": 93.6944, "matched_fragments": 326, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CACIIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902562285.1", "gtdb_species": "s__CACIIZ01 sp902562285", "ani": 91.4978, "matched_fragments": 279, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CACIIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902573735.1", "gtdb_species": "s__CACIIZ01 sp902573735", "ani": 82.3985, "matched_fragments": 257, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CACIIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902578545.1", "gtdb_species": "s__CACIIZ01 sp902578545", "ani": 81.4692, "matched_fragments": 250, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CACIIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.87", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.65", "min_intra_species_af": "0.64", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_902625475.1", "gtdb_species": "s__CACIIZ01 sp902625475", "ani": 80.8818, "matched_fragments": 176, "total_fragments": 488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__CACIIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodobacterales", "f__Rhodobacteraceae", "g__CACIIZ01", "s__CACIIZ01 sp902611605" ], "_genome_taxon": [ "uncultured", "Alphaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodobacterales", "f__Rhodobacteraceae", "g__CACIIZ01", "s__CACIIZ01 sp902611605", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhodobacterales", "Rhodobacteraceae", "CACIIZ01", "CACIIZ01", "sp902611605" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }