{
    "type": "genome",
    "identifier": "GCA_902615055.1",
    "organism": "uncultured Alphaproteobacteria bacterium",
    "title": "uncultured Alphaproteobacteria bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902615055.1",
        "bioproject": "PRJEB33281",
        "biosample": "SAMEA6074721",
        "wgs_master": "CACMNG000000000.1",
        "refseq_category": "na",
        "taxid": "91750",
        "species_taxid": "91750",
        "organism_name": "uncultured Alphaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "AG-919-D10",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/07",
        "asm_name": "AG-919-D10",
        "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/615/055/GCA_902615055.1_AG-919-D10",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-07",
    "dateModified": "2019-11-07",
    "datePublished": "2019-11-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Alphaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "91750"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.331 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1188637",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "240237",
        "N50 (bp)": "101511",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.5",
        "Number of CDSs": "1241",
        "Average Protein Length": "296.1",
        "Coding Ratio (%)": "92.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_003216195.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.67",
                "min_intra_species_ani": "95.48",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902543855.1",
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                "total_fragments": 378,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.80",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902619375.1",
                "gtdb_species": "s__HIMB59 sp902619375",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.65",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902518505.1",
                "gtdb_species": "s__HIMB59 sp902518505",
                "ani": 93.7218,
                "matched_fragments": 288,
                "total_fragments": 378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.57",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902599405.1",
                "gtdb_species": "s__HIMB59 sp902599405",
                "ani": 93.6398,
                "matched_fragments": 279,
                "total_fragments": 378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.30",
                "min_intra_species_ani": "95.00",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_902610255.1",
                "gtdb_species": "s__HIMB59 sp902610255",
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                "total_fragments": 378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "99.45",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_902524245.1",
                "gtdb_species": "s__HIMB59 sp902524245",
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                "matched_fragments": 304,
                "total_fragments": 378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.30",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902613845.1",
                "gtdb_species": "s__HIMB59 sp902613845",
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                "total_fragments": 378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.34",
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                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.79",
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            },
            {
                "accession": "GCA_902546975.1",
                "gtdb_species": "s__HIMB59 sp902546975",
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                "matched_fragments": 282,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.15",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_902521795.1",
                "gtdb_species": "s__HIMB59 sp902560595",
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                "total_fragments": 378,
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                "mean_intra_species_ani": "95.49",
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                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.73",
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                "status": "-"
            },
            {
                "accession": "GCA_902599045.1",
                "gtdb_species": "s__HIMB59 sp902615815",
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                "matched_fragments": 273,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
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                "mean_intra_species_ani": "96.41",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCA_902601865.1",
                "gtdb_species": "s__HIMB59 sp902601865",
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                "matched_fragments": 249,
                "total_fragments": 378,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__HIMB59;f__HIMB59;g__HIMB59",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__HIMB59",
        "f__HIMB59",
        "g__HIMB59",
        "s__HIMB59 sp003216195"
    ],
    "_genome_taxon": [
        "uncultured",
        "Alphaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__HIMB59",
        "f__HIMB59",
        "g__HIMB59",
        "s__HIMB59 sp003216195",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "HIMB59",
        "HIMB59",
        "HIMB59",
        "HIMB59",
        "sp003216195"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}