{
    "type": "genome",
    "identifier": "GCA_902616005.1",
    "organism": "uncultured SAR116 cluster alpha proteobacterium",
    "title": "uncultured SAR116 cluster alpha proteobacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902616005.1",
        "bioproject": "PRJEB33281",
        "biosample": "SAMEA6074770",
        "wgs_master": "CACMRG000000000.1",
        "refseq_category": "na",
        "taxid": "281031",
        "species_taxid": "281031",
        "organism_name": "uncultured SAR116 cluster alpha proteobacterium",
        "infraspecific_name": "",
        "isolate": "AG-919-I05",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/07",
        "asm_name": "AG-919-I05",
        "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/616/005/GCA_902616005.1_AG-919-I05",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-07",
    "dateModified": "2019-11-07",
    "datePublished": "2019-11-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured SAR116 cluster alpha proteobacterium"
        ],
        "sample_taxid": [
            "281031"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.460 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1664538",
        "Number of Sequences": "63",
        "Longest Sequences (bp)": "237703",
        "N50 (bp)": "61541",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.9",
        "Number of CDSs": "1657",
        "Average Protein Length": "300.8",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902616005.1",
                "gtdb_species": "s__TMED54 sp902616005",
                "ani": 100.0,
                "matched_fragments": 523,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902590245.1",
                "gtdb_species": "s__TMED54 sp902590245",
                "ani": 91.2334,
                "matched_fragments": 342,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902524215.1",
                "gtdb_species": "s__TMED54 sp902524215",
                "ani": 91.0169,
                "matched_fragments": 258,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003210115.1",
                "gtdb_species": "s__TMED54 sp003210115",
                "ani": 90.9106,
                "matched_fragments": 240,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902618195.1",
                "gtdb_species": "s__TMED54 sp902618195",
                "ani": 90.7817,
                "matched_fragments": 259,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902615995.1",
                "gtdb_species": "s__TMED54 sp902615995",
                "ani": 90.6763,
                "matched_fragments": 273,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902615025.1",
                "gtdb_species": "s__TMED54 sp902615025",
                "ani": 90.2277,
                "matched_fragments": 303,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902630555.1",
                "gtdb_species": "s__TMED54 sp902630555",
                "ani": 89.8743,
                "matched_fragments": 205,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902550555.1",
                "gtdb_species": "s__TMED54 sp902550555",
                "ani": 89.4798,
                "matched_fragments": 322,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004213885.1",
                "gtdb_species": "s__TMED54 sp004213885",
                "ani": 89.4022,
                "matched_fragments": 322,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Puniceispirillales;f__AAA536-G10;g__TMED54",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Puniceispirillales_A",
        "f__AAA536-G10",
        "g__TMED54",
        "s__TMED54 sp902616005"
    ],
    "_genome_taxon": [
        "uncultured",
        "SAR116",
        "cluster",
        "alpha",
        "proteobacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Puniceispirillales_A",
        "f__AAA536-G10",
        "g__TMED54",
        "s__TMED54 sp902616005",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Puniceispirillales",
        "A",
        "AAA536-G10",
        "TMED54",
        "TMED54",
        "sp902616005"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}