{ "type": "genome", "identifier": "GCA_902617475.1", "organism": "uncultured SAR86 cluster bacterium", "title": "uncultured SAR86 cluster bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902617475.1", "bioproject": "PRJEB33281", "biosample": "SAMEA6074844", "wgs_master": "CACMWT000000000.1", "refseq_category": "na", "taxid": "648174", "species_taxid": "648174", "organism_name": "uncultured SAR86 cluster bacterium", "infraspecific_name": "", "isolate": "AG-919-N15", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/07", "asm_name": "AG-919-N15", "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/617/475/GCA_902617475.1_AG-919-N15", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-07", "dateModified": "2019-11-07", "datePublished": "2019-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured SAR86 cluster bacterium" ], "sample_taxid": [ "648174" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.264 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.35, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "941160", "Number of Sequences": "41", "Longest Sequences (bp)": "132225", "N50 (bp)": "44516", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.0", "Number of CDSs": "936", "Average Protein Length": "305.0", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 89.35, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902591925.1", "gtdb_species": "s__SAR86A sp902591925", "ani": 97.3619, "matched_fragments": 264, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.32", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_902617045.1", "gtdb_species": "s__SAR86A sp902617045", "ani": 91.1085, "matched_fragments": 210, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.06", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_004212975.1", "gtdb_species": "s__SAR86A sp004212975", "ani": 90.8587, "matched_fragments": 159, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.30", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.76", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_902612915.1", "gtdb_species": "s__SAR86A sp902612915", "ani": 90.6596, "matched_fragments": 202, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "95.61", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.75", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_902541175.1", "gtdb_species": "s__SAR86A sp902541175", "ani": 90.5739, "matched_fragments": 216, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.65", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902547295.1", "gtdb_species": "s__SAR86A sp902547295", "ani": 90.4898, "matched_fragments": 184, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902630885.1", "gtdb_species": "s__SAR86A sp902630885", "ani": 82.9051, "matched_fragments": 188, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902631785.1", "gtdb_species": "s__SAR86A sp902631785", "ani": 82.8843, "matched_fragments": 173, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000252525.1", "gtdb_species": "s__SAR86A sp000252525", "ani": 82.4236, "matched_fragments": 135, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "95.25", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCA_902579825.1", "gtdb_species": "s__SAR86A sp902579825", "ani": 79.5984, "matched_fragments": 114, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902559345.1", "gtdb_species": "s__SAR86A sp902559345", "ani": 79.1121, "matched_fragments": 95, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902516285.1", "gtdb_species": "s__SAR86A sp902516285", "ani": 78.1071, "matched_fragments": 97, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SAR86A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.51", "min_intra_species_ani": "96.51", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902557705.1", "gtdb_species": "s__SCGC-AAA076-P13 sp902557705", "ani": 77.5659, "matched_fragments": 51, "total_fragments": 293, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__SAR86;f__D2472;g__SCGC-AAA076-P13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__SAR86", "f__D2472", "g__SAR86A", "s__SAR86A sp902591925" ], "_genome_taxon": [ "uncultured", "SAR86", "cluster", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__SAR86", "f__D2472", "g__SAR86A", "s__SAR86A sp902591925", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "SAR86", "D2472", "SAR86A", "SAR86A", "sp902591925" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }