{ "type": "genome", "identifier": "GCA_902623805.1", "organism": "uncultured prokaryote", "title": "uncultured prokaryote", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902623805.1", "bioproject": "PRJEB33281", "biosample": "SAMEA6070037", "wgs_master": "CACNVD000000000.1", "refseq_category": "na", "taxid": "198431", "species_taxid": "198431", "organism_name": "uncultured prokaryote", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/07", "asm_name": "AG-893-O23", "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/623/805/GCA_902623805.1_AG-893-O23", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-07", "dateModified": "2019-11-07", "datePublished": "2019-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured prokaryote" ], "sample_taxid": [ "198431" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.224 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "800370", "Number of Sequences": "63", "Longest Sequences (bp)": "39221", "N50 (bp)": "21840", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.7", "Number of CDSs": "842", "Average Protein Length": "255.9", "Coding Ratio (%)": "80.8", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000635015.1", "gtdb_species": "s__Prochlorococcus_A sp000635015", "ani": 99.0288, "matched_fragments": 204, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_003210155.1", "gtdb_species": "s__Prochlorococcus_A sp003210155", "ani": 94.1057, "matched_fragments": 190, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003280655.1", "gtdb_species": "s__Prochlorococcus_A sp003280655", "ani": 93.7327, "matched_fragments": 209, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_003214085.1", "gtdb_species": "s__Prochlorococcus_A sp003214085", "ani": 93.5662, "matched_fragments": 176, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003216915.1", "gtdb_species": "s__Prochlorococcus_A sp003216915", "ani": 93.4916, "matched_fragments": 186, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902538225.1", "gtdb_species": "s__Prochlorococcus_A sp902538225", "ani": 93.4817, "matched_fragments": 135, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000015965.1", "gtdb_species": "s__Prochlorococcus_A marinus_E", "ani": 93.3665, "matched_fragments": 217, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003216795.1", "gtdb_species": "s__Prochlorococcus_A sp003216795", "ani": 93.3395, "matched_fragments": 187, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902525585.1", "gtdb_species": "s__Prochlorococcus_A sp902525585", "ani": 93.1204, "matched_fragments": 135, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902606505.1", "gtdb_species": "s__Prochlorococcus_A sp902606505", "ani": 92.8149, "matched_fragments": 163, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902571335.1", "gtdb_species": "s__Prochlorococcus_A sp902571335", "ani": 92.4146, "matched_fragments": 184, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003216535.1", "gtdb_species": "s__Prochlorococcus_A sp003216535", "ani": 91.7788, "matched_fragments": 187, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017695955.1", "gtdb_species": "s__Prochlorococcus_A marinus_AD", "ani": 90.9845, "matched_fragments": 212, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Prochlorococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__PCC-6307", "f__Cyanobiaceae", "g__Prochlorococcus_A", "s__Prochlorococcus_A sp000635015" ], "_genome_taxon": [ "uncultured", "prokaryote", "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__PCC-6307", "f__Cyanobiaceae", "g__Prochlorococcus_A", "s__Prochlorococcus_A sp000635015", "Bacteria", "Cyanobacteriota", "Cyanobacteriia", "PCC-6307", "Cyanobiaceae", "Prochlorococcus", "A", "Prochlorococcus", "A", "sp000635015" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }