{
    "type": "genome",
    "identifier": "GCA_902633985.1",
    "organism": "uncultured Pelagibacteraceae bacterium",
    "title": "uncultured Pelagibacteraceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902633985.1",
        "bioproject": "PRJEB33281",
        "biosample": "SAMEA6079687",
        "wgs_master": "CACPHV000000000.1",
        "refseq_category": "na",
        "taxid": "1667051",
        "species_taxid": "1667051",
        "organism_name": "uncultured Pelagibacteraceae bacterium",
        "infraspecific_name": "",
        "isolate": "AG-426-M05",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/07",
        "asm_name": "AG-426-M05",
        "submitter": "WOODS HOLE OCEANOGRAPHIC INSTITUTION",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/633/985/GCA_902633985.1_AG-426-M05",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-07",
    "dateModified": "2019-11-07",
    "datePublished": "2019-11-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Pelagibacteraceae bacterium"
        ],
        "sample_taxid": [
            "1667051"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.338 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1224332",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "155656",
        "N50 (bp)": "77256",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.2",
        "Number of CDSs": "1257",
        "Average Protein Length": "299.2",
        "Coding Ratio (%)": "92.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Candidatus Pelagibacter ubique",
                "strain": "strain=HTCC1062",
                "accession": "GCA_000012345.1",
                "taxid": 198252,
                "species_taxid": 198252,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7103,
                "matched_fragments": 180,
                "total_fragments": 387,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902633985.1",
                "gtdb_species": "s__Pelagibacter sp902633985",
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                "matched_fragments": 384,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001180205.1",
                "gtdb_species": "s__Pelagibacter ubique_O",
                "ani": 91.9763,
                "matched_fragments": 212,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902599335.1",
                "gtdb_species": "s__Pelagibacter sp902599335",
                "ani": 91.9339,
                "matched_fragments": 289,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902555665.1",
                "gtdb_species": "s__Pelagibacter sp902555665",
                "ani": 91.8286,
                "matched_fragments": 244,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902558545.1",
                "gtdb_species": "s__Pelagibacter sp902558545",
                "ani": 91.5144,
                "matched_fragments": 258,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902538885.1",
                "gtdb_species": "s__Pelagibacter sp902538885",
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                "matched_fragments": 236,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902596375.1",
                "gtdb_species": "s__Pelagibacter sp902596375",
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                "matched_fragments": 240,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902586485.1",
                "gtdb_species": "s__Pelagibacter sp902586485",
                "ani": 91.1816,
                "matched_fragments": 244,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902565325.1",
                "gtdb_species": "s__Pelagibacter sp902565325",
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                "matched_fragments": 184,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902558835.1",
                "gtdb_species": "s__Pelagibacter sp902558835",
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                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902574215.1",
                "gtdb_species": "s__Pelagibacter sp902574215",
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                "matched_fragments": 213,
                "total_fragments": 387,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_902587755.1",
                "gtdb_species": "s__Pelagibacter sp902587755",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000504225.1",
                "gtdb_species": "s__Pelagibacter ubique_Q",
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                "matched_fragments": 307,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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            {
                "accession": "GCA_902611405.1",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_902628305.1",
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            {
                "accession": "GCA_902623075.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001180225.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_003279715.1",
                "gtdb_species": "s__Pelagibacter sp003279715",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.921,
        "cell_length": null,
        "doubling_h": 1.539,
        "growth_tmp": 17.5,
        "optimum_tmp": 37.0,
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        "genome_size": 1339460.152,
        "gc_content": 30.033,
        "coding_genes": 1406.332,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 33.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": null,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Pelagibacterales",
        "f__Pelagibacteraceae",
        "g__Pelagibacter",
        "s__Pelagibacter sp902633985"
    ],
    "_genome_taxon": [
        "uncultured",
        "Pelagibacteraceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Pelagibacterales",
        "f__Pelagibacteraceae",
        "g__Pelagibacter",
        "s__Pelagibacter sp902633985",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Pelagibacterales",
        "Pelagibacteraceae",
        "Pelagibacter",
        "Pelagibacter",
        "sp902633985"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}