{ "type": "genome", "identifier": "GCA_902751385.1", "organism": "uncultured prokaryote", "title": "uncultured prokaryote", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "KTH", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902751385.1", "bioproject": "PRJEB34883", "biosample": "SAMEA6513392", "wgs_master": "CADDIX000000000.1", "refseq_category": "na", "taxid": "198431", "species_taxid": "198431", "organism_name": "uncultured prokaryote", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/05", "asm_name": "P1994_106_bin124_mag_fasta", "submitter": "KTH", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/751/385/GCA_902751385.1_P1994_106_bin124_mag_fasta", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-05", "dateModified": "2020-03-05", "datePublished": "2020-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured prokaryote" ], "sample_taxid": [ "198431" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Baltic Sea" ], "sample_host_location_id": [], "data_size": "0.867 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3084725", "Number of Sequences": "161", "Longest Sequences (bp)": "78285", "N50 (bp)": "31647", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "2461", "Average Protein Length": "366.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 74.8786, "matched_fragments": 50, "total_fragments": 949, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia parietis", "strain": "strain=DSM 45256", "accession": "GCA_017876315.1", "taxid": 570936, "species_taxid": 570936, "relation_to_type": "type", "validated": true, "ani": 74.7958, "matched_fragments": 54, "total_fragments": 949, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016719645.1", "gtdb_species": "s__PNOJ01 sp016719645", "ani": 78.6218, "matched_fragments": 354, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__PNOJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.99", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018814885.1", "gtdb_species": "s__JAHIYU01 sp018814885", "ani": 78.5453, "matched_fragments": 318, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__JAHIYU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.76", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013824755.1", "gtdb_species": "s__PNOJ01 sp013824755", "ani": 78.4257, "matched_fragments": 280, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__PNOJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014859985.1", "gtdb_species": "s__LZORAL124-64-63 sp014859985", "ani": 77.9615, "matched_fragments": 223, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__LZORAL124-64-63", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018829565.1", "gtdb_species": "s__LZORAL124-64-63 sp018829565", "ani": 77.4051, "matched_fragments": 201, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__LZORAL124-64-63", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903859215.1", "gtdb_species": "s__CAINDZ01 sp903859215", "ani": 77.1412, "matched_fragments": 168, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__CAINDZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903847545.1", "gtdb_species": "s__CAINDZ01 sp903847545", "ani": 77.1005, "matched_fragments": 132, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__CAINDZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016712675.1", "gtdb_species": "s__CAINDZ01 sp016712675", "ani": 76.9498, "matched_fragments": 173, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__CAINDZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014730255.1", "gtdb_species": "s__Glo-17 sp014730255", "ani": 76.938, "matched_fragments": 157, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__Glo-17", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016873405.1", "gtdb_species": "s__CAINDZ01 sp016873405", "ani": 76.8631, "matched_fragments": 99, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__CAINDZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003353795.1", "gtdb_species": "s__Glo-17 sp003353795", "ani": 76.6892, "matched_fragments": 180, "total_fragments": 949, "gtdb_taxonomy": "d__Bacteria;p__Krumholzibacteriota;c__Krumholzibacteria;o__LZORAL124-64-63;f__LZORAL124-64-63;g__Glo-17", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Krumholzibacteriota", "c__Krumholzibacteria", "o__LZORAL124-64-63", "f__LZORAL124-64-63", "g__CALEMW01", "s__CALEMW01 sp937910695" ], "_genome_taxon": [ "uncultured", "prokaryote", "d__Bacteria", "p__Krumholzibacteriota", "c__Krumholzibacteria", "o__LZORAL124-64-63", "f__LZORAL124-64-63", "g__CALEMW01", "s__CALEMW01 sp937910695", "Bacteria", "Krumholzibacteriota", "Krumholzibacteria", "LZORAL124-64-63", "LZORAL124-64-63", "CALEMW01", "CALEMW01", "sp937910695" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }