{
    "type": "genome",
    "identifier": "GCA_902752835.1",
    "organism": "uncultured prokaryote",
    "title": "uncultured prokaryote",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "KTH",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902752835.1",
        "bioproject": "PRJEB34883",
        "biosample": "SAMEA6513432",
        "wgs_master": "CADDPH000000000.1",
        "refseq_category": "na",
        "taxid": "198431",
        "species_taxid": "198431",
        "organism_name": "uncultured prokaryote",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/05",
        "asm_name": "P4201_107_bin143_mag_fasta",
        "submitter": "KTH",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/752/835/GCA_902752835.1_P4201_107_bin143_mag_fasta",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-05",
    "dateModified": "2020-03-05",
    "datePublished": "2020-03-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured prokaryote"
        ],
        "sample_taxid": [
            "198431"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Baltic Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.607 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.57,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2106576",
        "Number of Sequences": "767",
        "Longest Sequences (bp)": "17076",
        "N50 (bp)": "3343",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.3",
        "Number of CDSs": "1553",
        "Average Protein Length": "261.9",
        "Coding Ratio (%)": "57.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Limnohabitans curvus",
                "strain": "strain=MWH-C5",
                "accession": "GCA_003063475.1",
                "taxid": 323423,
                "species_taxid": 323423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2451,
                "matched_fragments": 90,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans planktonicus",
                "strain": "strain=II-D5",
                "accession": "GCA_001270065.2",
                "taxid": 540060,
                "species_taxid": 540060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.026,
                "matched_fragments": 74,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans parvus",
                "strain": "strain=II-B4",
                "accession": "GCA_003063455.1",
                "taxid": 540061,
                "species_taxid": 540061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9267,
                "matched_fragments": 82,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax saidenbachensis",
                "strain": "strain=DSM 22694",
                "accession": "GCA_001955715.1",
                "taxid": 1484693,
                "species_taxid": 1484693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8421,
                "matched_fragments": 50,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax aquaticus",
                "strain": "strain=Gr-4",
                "accession": "GCA_006974105.1",
                "taxid": 2527691,
                "species_taxid": 2527691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7434,
                "matched_fragments": 57,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnohabitans radicicola",
                "strain": "strain=JUR4",
                "accession": "GCA_014837235.1",
                "taxid": 2771427,
                "species_taxid": 2771427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6214,
                "matched_fragments": 73,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax lacus",
                "strain": "strain=IMCC26218",
                "accession": "GCA_003415675.1",
                "taxid": 2184758,
                "species_taxid": 2184758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4793,
                "matched_fragments": 65,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax carolinensis",
                "strain": "strain=NA3",
                "accession": "GCA_002157145.1",
                "taxid": 553814,
                "species_taxid": 553814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.428,
                "matched_fragments": 53,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter gracilis",
                "strain": "strain=ATCC BAA-807",
                "accession": "GCA_000518645.1",
                "taxid": 230310,
                "species_taxid": 230310,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1841,
                "matched_fragments": 61,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoferax ferrireducens",
                "strain": "strain=DSM 15236",
                "accession": "GCA_000013605.1",
                "taxid": 192843,
                "species_taxid": 192843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9905,
                "matched_fragments": 50,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7264,
                "matched_fragments": 62,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas fluminis",
                "strain": "strain=CJ34",
                "accession": "GCA_019186805.1",
                "taxid": 2796366,
                "species_taxid": 2796366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4168,
                "matched_fragments": 50,
                "total_fragments": 303,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.57,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009927495.1",
                "gtdb_species": "s__Limnohabitans sp009927495",
                "ani": 90.9569,
                "matched_fragments": 191,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.69",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013205525.1",
                "gtdb_species": "s__Limnohabitans sp013205525",
                "ani": 81.228,
                "matched_fragments": 171,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903956845.1",
                "gtdb_species": "s__Limnohabitans sp903956845",
                "ani": 80.0908,
                "matched_fragments": 153,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903887325.1",
                "gtdb_species": "s__Limnohabitans sp903887325",
                "ani": 78.8397,
                "matched_fragments": 135,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_009921465.1",
                "gtdb_species": "s__Limnohabitans sp009921465",
                "ani": 78.626,
                "matched_fragments": 50,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009693225.1",
                "gtdb_species": "s__Limnohabitans sp009693225",
                "ani": 78.4134,
                "matched_fragments": 77,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002778315.1",
                "gtdb_species": "s__Limnohabitans sp002778315",
                "ani": 78.3223,
                "matched_fragments": 90,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003063475.1",
                "gtdb_species": "s__Limnohabitans curvus",
                "ani": 78.2451,
                "matched_fragments": 90,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009925585.1",
                "gtdb_species": "s__Limnohabitans sp009925585",
                "ani": 78.2286,
                "matched_fragments": 139,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "99.01",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005789825.1",
                "gtdb_species": "s__Limnohabitans sp005789825",
                "ani": 78.2191,
                "matched_fragments": 124,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.68",
                "min_intra_species_ani": "96.68",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903916355.1",
                "gtdb_species": "s__Limnohabitans_A sp903916355",
                "ani": 78.0844,
                "matched_fragments": 73,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903870145.1",
                "gtdb_species": "s__Limnohabitans_A sp903870145",
                "ani": 78.0596,
                "matched_fragments": 65,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_002778325.1",
                "gtdb_species": "s__Limnohabitans sp002778325",
                "ani": 77.959,
                "matched_fragments": 97,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018882835.1",
                "gtdb_species": "s__Limnohabitans sp018882835",
                "ani": 77.8368,
                "matched_fragments": 77,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001269365.1",
                "gtdb_species": "s__Limnohabitans_A sp001269365",
                "ani": 77.8068,
                "matched_fragments": 61,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002454975.1",
                "gtdb_species": "s__Hylemonella sp002454975",
                "ani": 77.6043,
                "matched_fragments": 74,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003063375.1",
                "gtdb_species": "s__Limnohabitans_A sp003063375",
                "ani": 77.523,
                "matched_fragments": 53,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903822825.1",
                "gtdb_species": "s__Limnohabitans_A sp903822825",
                "ani": 77.4604,
                "matched_fragments": 63,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002157145.1",
                "gtdb_species": "s__Acidovorax carolinensis",
                "ani": 77.428,
                "matched_fragments": 53,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.15",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_009923505.1",
                "gtdb_species": "s__Limnohabitans sp009923505",
                "ani": 77.3882,
                "matched_fragments": 63,
                "total_fragments": 303,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "96.55",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Limnohabitans",
        "s__Limnohabitans sp945882755"
    ],
    "_genome_taxon": [
        "uncultured",
        "prokaryote",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Limnohabitans",
        "s__Limnohabitans sp945882755",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Limnohabitans",
        "Limnohabitans",
        "sp945882755"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}