{ "type": "genome", "identifier": "GCA_902752965.1", "organism": "uncultured prokaryote", "title": "uncultured prokaryote", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "KTH", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902752965.1", "bioproject": "PRJEB34883", "biosample": "SAMEA6513433", "wgs_master": "CADDPN000000000.1", "refseq_category": "na", "taxid": "198431", "species_taxid": "198431", "organism_name": "uncultured prokaryote", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/05", "asm_name": "P4201_107_bin150_mag_fasta", "submitter": "KTH", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/752/965/GCA_902752965.1_P4201_107_bin150_mag_fasta", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-05", "dateModified": "2020-03-05", "datePublished": "2020-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured prokaryote" ], "sample_taxid": [ "198431" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Baltic Sea" ], "sample_host_location_id": [], "data_size": "1.263 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.58, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4441445", "Number of Sequences": "723", "Longest Sequences (bp)": "62457", "N50 (bp)": "9924", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "3703", "Average Protein Length": "298.6", "Coding Ratio (%)": "74.7", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanibaculum indicum", "strain": "strain=P24", "accession": "GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 76.3591, "matched_fragments": 76, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum nanhaiense", "strain": "strain=L54-1-50", "accession": "GCA_002148795.1", "taxid": 1909734, "species_taxid": 1909734, "relation_to_type": "type", "validated": true, "ani": 76.0171, "matched_fragments": 100, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea sediminum", "strain": "strain=NBU1469", "accession": "GCA_014904705.1", "taxid": 2775867, "species_taxid": 2775867, "relation_to_type": "type", "validated": true, "ani": 75.9619, "matched_fragments": 84, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 75.8759, "matched_fragments": 72, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 75.8388, "matched_fragments": 97, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea nitritireducens", "strain": "strain=DSM 19540", "accession": "GCA_014904795.1", "taxid": 568392, "species_taxid": 568392, "relation_to_type": "type", "validated": true, "ani": 75.823, "matched_fragments": 61, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella mucosa", "strain": "strain=KEMB 2255-438", "accession": "GCA_016765655.2", "taxid": 1789672, "species_taxid": 1789672, "relation_to_type": "type", "validated": true, "ani": 75.8094, "matched_fragments": 104, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dongia mobilis", "strain": "strain=CGMCC 1.7660", "accession": "GCA_004363235.1", "taxid": 578943, "species_taxid": 578943, "relation_to_type": "type", "validated": true, "ani": 75.7286, "matched_fragments": 78, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum cyanobacteriorum", "strain": "strain=TH16", "accession": "GCA_002868735.1", "taxid": 1612173, "species_taxid": 1612173, "relation_to_type": "type", "validated": true, "ani": 75.6693, "matched_fragments": 67, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum lipoferum", "strain": "strain=59b", "accession": "GCA_008364955.1", "taxid": 193, "species_taxid": 193, "relation_to_type": "type", "validated": true, "ani": 75.6567, "matched_fragments": 95, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea denitrificans", "strain": "strain=DSM 18348", "accession": "GCA_000426505.1", "taxid": 390877, "species_taxid": 390877, "relation_to_type": "type", "validated": true, "ani": 75.6513, "matched_fragments": 61, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niveispirillum cyanobacteriorum", "strain": "strain=CGMCC 1.12958", "accession": "GCA_014640215.1", "taxid": 1612173, "species_taxid": 1612173, "relation_to_type": "type", "validated": true, "ani": 75.6489, "matched_fragments": 67, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=DSM 21654", "accession": "GCA_000960825.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 75.6058, "matched_fragments": 106, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 75.5903, "matched_fragments": 54, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 75.5588, "matched_fragments": 89, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella massiliensis", "strain": "strain=521", "accession": "GCA_000312425.1", "taxid": 445220, "species_taxid": 445220, "relation_to_type": "type", "validated": true, "ani": 75.5583, "matched_fragments": 69, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 75.436, "matched_fragments": 61, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belnapia rosea", "strain": "strain=CGMCC 1.10758", "accession": "GCA_900104205.1", "taxid": 938405, "species_taxid": 938405, "relation_to_type": "type", "validated": true, "ani": 75.4029, "matched_fragments": 54, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 75.2542, "matched_fragments": 92, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.2262, "matched_fragments": 74, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 75.2129, "matched_fragments": 56, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.58, "contamination": 0.52, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905479125.1", "gtdb_species": "s__UBA830 sp905479125", "ani": 83.1784, "matched_fragments": 708, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__MPNO01;f__UBA830;g__UBA830", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905181725.1", "gtdb_species": "s__UBA830 sp905181725", "ani": 81.5972, "matched_fragments": 606, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__MPNO01;f__UBA830;g__UBA830", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002689465.1", "gtdb_species": "s__UBA830 sp002689465", "ani": 78.2119, "matched_fragments": 136, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__MPNO01;f__UBA830;g__UBA830", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002471575.1", "gtdb_species": "s__UBA830 sp002471575", "ani": 77.4195, "matched_fragments": 283, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__MPNO01;f__UBA830;g__UBA830", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "95.90", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_009377375.1", "gtdb_species": "s__WHUE01 sp009377375", "ani": 76.4331, "matched_fragments": 159, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__MPNO01;f__UBA2964;g__WHUE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002239065.1", "gtdb_species": "s__MPNO01 sp002239065", "ani": 76.381, "matched_fragments": 145, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__MPNO01;f__MPNO01;g__MPNO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903822185.1", "gtdb_species": "s__CAIKMD01 sp903822185", "ani": 75.9227, "matched_fragments": 57, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__CAIKMD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018823745.1", "gtdb_species": "s__Oceanibaculum sp018823745", "ani": 75.8236, "matched_fragments": 100, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Oceanibaculales;f__Oceanibaculaceae;g__Oceanibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014904795.1", "gtdb_species": "s__Nisaea nitritireducens", "ani": 75.823, "matched_fragments": 61, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Thalassobaculales;f__Thalassobaculaceae;g__Nisaea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016765655.1", "gtdb_species": "s__Skermanella mucosa", "ani": 75.7946, "matched_fragments": 103, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Skermanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016869975.1", "gtdb_species": "s__JAFAZJ01 sp016869975", "ani": 75.7538, "matched_fragments": 78, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__JAFAZJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876095.1", "gtdb_species": "s__Azospirillum agricola", "ani": 75.7059, "matched_fragments": 92, "total_fragments": 1105, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.88", "min_intra_species_ani": "96.88", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014174355.1", "gtdb_species": "s__Gluconacetobacter azotocaptans", "ani": 75.7033, "matched_fragments": 51, "total_fragments": 1105, "gtdb_taxonomy": 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