{ "type": "genome", "identifier": "GCA_902754475.1", "organism": "uncultured prokaryote", "title": "uncultured prokaryote", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "KTH", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902754475.1", "bioproject": "PRJEB34883", "biosample": "SAMEA6513187", "wgs_master": "CADDVD000000000.1", "refseq_category": "na", "taxid": "198431", "species_taxid": "198431", "organism_name": "uncultured prokaryote", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/05", "asm_name": "SRR3727516_bin63_mag_fasta", "submitter": "KTH", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/754/475/GCA_902754475.1_SRR3727516_bin63_mag_fasta", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-05", "dateModified": "2020-03-05", "datePublished": "2020-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured prokaryote" ], "sample_taxid": [ "198431" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Baltic Sea" ], "sample_host_location_id": [], "data_size": "0.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2891972", "Number of Sequences": "436", "Longest Sequences (bp)": "147180", "N50 (bp)": "17857", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.1", "Number of CDSs": "2476", "Average Protein Length": "308.7", "Coding Ratio (%)": "79.3", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 2576305, "relation_to_type": "type", "validated": true, "ani": 77.0091, "matched_fragments": 87, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 76.9987, "matched_fragments": 96, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 76.8744, "matched_fragments": 94, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 76.8382, "matched_fragments": 86, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 76.8227, "matched_fragments": 86, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_001298675.1", "taxid": 343013, "species_taxid": 343013, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrae", "strain": "strain=NBRC 106524", "accession": "GCA_001544075.1", "taxid": 673548, "species_taxid": 673548, "relation_to_type": "type", "validated": true, "ani": 76.4658, "matched_fragments": 61, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia oryzae", "strain": "strain=KADR8-3", "accession": "GCA_003008535.1", "taxid": 2109914, "species_taxid": 2109914, "relation_to_type": "type", "validated": true, "ani": 76.4417, "matched_fragments": 67, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax valerianellae", "strain": "strain=DSM 16619", "accession": "GCA_900102625.1", "taxid": 187868, "species_taxid": 187868, "relation_to_type": "type", "validated": true, "ani": 76.4389, "matched_fragments": 72, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 76.2739, "matched_fragments": 76, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 76.2281, "matched_fragments": 56, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 76.1733, "matched_fragments": 105, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 76.1525, "matched_fragments": 87, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 76.1036, "matched_fragments": 61, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira psychrophila", "strain": "strain=DSM 11588", "accession": "GCA_000688255.1", "taxid": 80882, "species_taxid": 80882, "relation_to_type": "type", "validated": true, "ani": 76.0112, "matched_fragments": 68, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, 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