{ "type": "genome", "identifier": "GCA_902757335.1", "organism": "uncultured Prevotellaceae bacterium", "title": "uncultured Prevotellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902757335.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148383", "wgs_master": "CACVUU000000000.1", "refseq_category": "na", "taxid": "370804", "species_taxid": "370804", "organism_name": "uncultured Prevotellaceae bacterium", "infraspecific_name": "", "isolate": "RUG10250", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/15", "asm_name": "Rumen uncultured genome RUG10250", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/757/335/GCA_902757335.1_Rumen_uncultured_genome_RUG10250", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-15", "dateModified": "2020-02-15", "datePublished": "2020-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotellaceae bacterium" ], "sample_taxid": [ "370804" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.662 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.91, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2315508", "Number of Sequences": "84", "Longest Sequences (bp)": "143949", "N50 (bp)": "45492", "Gap Ratio (%)": "0.009112", "GCcontent (%)": "47.2", "Number of CDSs": "1817", "Average Protein Length": "352.8", "Coding Ratio (%)": "83.1", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 81.4003, "matched_fragments": 325, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2021, "matched_fragments": 350, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9964, "matched_fragments": 356, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9667, "matched_fragments": 363, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5085, "matched_fragments": 134, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.7121, "matched_fragments": 119, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.6404, "matched_fragments": 94, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella melaninogenica", "strain": "strain=FDAARGOS_1566", "accession": "GCA_020735785.1", "taxid": 28132, "species_taxid": 28132, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3649, "matched_fragments": 78, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella herbatica", "strain": "strain=WR041", "accession": "GCA_017347605.1", "taxid": 2801997, "species_taxid": 2801997, "relation_to_type": "type", "validated": true, "ani": 77.235, "matched_fragments": 61, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 77.0883, "matched_fragments": 77, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=DSM 16972", "accession": "GCA_000426585.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 77.007, "matched_fragments": 90, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.9902, "matched_fragments": 86, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 76.9547, "matched_fragments": 132, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 76.8076, "matched_fragments": 52, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella mizrahii", "strain": "strain=LKV-178-WT-2A", "accession": "GCA_009695775.1", "taxid": 2606637, "species_taxid": 2606637, "relation_to_type": "type", "validated": true, "ani": 76.6676, "matched_fragments": 109, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 76.6391, "matched_fragments": 50, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.394, "matched_fragments": 85, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 65.91, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009495355.1", "gtdb_species": 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