{ "type": "genome", "identifier": "GCA_902757525.1", "organism": "uncultured Prevotellaceae bacterium", "title": "uncultured Prevotellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902757525.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148405", "wgs_master": "CACVVM000000000.1", "refseq_category": "na", "taxid": "370804", "species_taxid": "370804", "organism_name": "uncultured Prevotellaceae bacterium", "infraspecific_name": "", "isolate": "RUG10272", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG10272", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/757/525/GCA_902757525.1_Rumen_uncultured_genome_RUG10272", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotellaceae bacterium" ], "sample_taxid": [ "370804" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.778 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.16, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2731248", "Number of Sequences": "352", "Longest Sequences (bp)": "41207", "N50 (bp)": "10454", "Gap Ratio (%)": "0.011570", "GCcontent (%)": "55.8", "Number of CDSs": "1795", "Average Protein Length": "363.5", "Coding Ratio (%)": "71.7", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 77.593, "matched_fragments": 146, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.2571, "matched_fragments": 102, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 77.0685, "matched_fragments": 124, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9481, "matched_fragments": 96, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=DSM 16972", "accession": "GCA_000426585.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.9438, "matched_fragments": 97, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 76.871, "matched_fragments": 72, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.8703, "matched_fragments": 97, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 76.5922, "matched_fragments": 55, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentasini", "strain": "strain=JCM 15908", "accession": "GCA_000614065.1", "taxid": 589537, "species_taxid": 589537, "relation_to_type": "type", "validated": true, "ani": 76.5009, "matched_fragments": 60, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.3185, "matched_fragments": 82, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella mizrahii", "strain": "strain=LKV-178-WT-2A", "accession": "GCA_009695775.1", "taxid": 2606637, "species_taxid": 2606637, "relation_to_type": "type", "validated": true, "ani": 76.3164, "matched_fragments": 81, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 69.16, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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