{ "type": "genome", "identifier": "GCA_902757605.1", "organism": "uncultured Prevotellaceae bacterium", "title": "uncultured Prevotellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902757605.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148418", "wgs_master": "CACVVU000000000.1", "refseq_category": "na", "taxid": "370804", "species_taxid": "370804", "organism_name": "uncultured Prevotellaceae bacterium", "infraspecific_name": "", "isolate": "RUG10285", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG10285", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/757/605/GCA_902757605.1_Rumen_uncultured_genome_RUG10285", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotellaceae bacterium" ], "sample_taxid": [ "370804" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.157 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4048070", "Number of Sequences": "98", "Longest Sequences (bp)": "249178", "N50 (bp)": "69508", "Gap Ratio (%)": "0.001408", "GCcontent (%)": "42.4", "Number of CDSs": "2929", "Average Protein Length": "404.9", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella dentasini", "strain": "strain=JCM 15908", "accession": "GCA_000614065.1", "taxid": 589537, "species_taxid": 589537, "relation_to_type": "type", "validated": true, "ani": 77.3589, "matched_fragments": 50, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1702, "matched_fragments": 56, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 77.0971, "matched_fragments": 58, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 76.916, "matched_fragments": 76, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 76.9113, "matched_fragments": 76, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 76.9012, "matched_fragments": 64, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 76.7901, "matched_fragments": 94, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 76.7683, "matched_fragments": 54, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_001953955.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 76.7683, "matched_fragments": 54, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=JCM 12249", "accession": "GCA_000613485.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.7043, "matched_fragments": 56, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=DSM 19665", "accession": "GCA_000378085.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.6994, "matched_fragments": 58, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=ATCC 15930", "accession": "GCA_000698925.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.6965, "matched_fragments": 55, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bryantii", "strain": "strain=DSM 11371", "accession": "GCA_019973295.1", "taxid": 77095, "species_taxid": 77095, "relation_to_type": "type", "validated": true, "ani": 76.6879, "matched_fragments": 64, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bryantii", "strain": "strain=B14", "accession": "GCA_022024235.1", "taxid": 77095, "species_taxid": 77095, "relation_to_type": "type", "validated": true, "ani": 76.6869, "matched_fragments": 65, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 76.6847, "matched_fragments": 53, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=JCM 15638", "accession": "GCA_000613965.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 76.6601, "matched_fragments": 57, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella maculosa", "strain": "strain=DSM 19339", "accession": "GCA_000382385.1", "taxid": 439703, "species_taxid": 439703, "relation_to_type": "type", "validated": true, "ani": 76.6364, "matched_fragments": 61, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 76.6041, "matched_fragments": 51, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 76.5363, "matched_fragments": 51, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bryantii", "strain": "strain=B14", "accession": "GCA_000179055.1", "taxid": 77095, "species_taxid": 77095, "relation_to_type": "type", "validated": true, "ani": 76.4897, "matched_fragments": 64, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900314715.1", "gtdb_species": "s__Prevotella sp900314715", "ani": 100.0, "matched_fragments": 1289, "total_fragments": 1299, "gtdb_taxonomy": 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