{
    "type": "genome",
    "identifier": "GCA_902758225.1",
    "organism": "uncultured Spirochaetaceae bacterium",
    "title": "uncultured Spirochaetaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902758225.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148474",
        "wgs_master": "CACVYI000000000.1",
        "refseq_category": "na",
        "taxid": "201186",
        "species_taxid": "201186",
        "organism_name": "uncultured Spirochaetaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RUG10341",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/17",
        "asm_name": "Rumen uncultured genome RUG10341",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/758/225/GCA_902758225.1_Rumen_uncultured_genome_RUG10341",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-17",
    "dateModified": "2020-02-17",
    "datePublished": "2020-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Spirochaetaceae bacterium"
        ],
        "sample_taxid": [
            "201186"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.795 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.29,
        "contamination": 6.71,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2823487",
        "Number of Sequences": "532",
        "Longest Sequences (bp)": "30837",
        "N50 (bp)": "6334",
        "Gap Ratio (%)": "0.020188",
        "GCcontent (%)": "50.0",
        "Number of CDSs": "2129",
        "Average Protein Length": "307.3",
        "Coding Ratio (%)": "69.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 82.29,
            "contamination": 6.71,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902792795.1",
                "gtdb_species": "s__Treponema_D sp902792795",
                "ani": 88.1788,
                "matched_fragments": 452,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.12",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902799965.1",
                "gtdb_species": "s__Treponema_D sp902799965",
                "ani": 87.777,
                "matched_fragments": 438,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016290995.1",
                "gtdb_species": "s__Treponema_D sp016290995",
                "ani": 87.3743,
                "matched_fragments": 447,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900316905.1",
                "gtdb_species": "s__Treponema_D sp900316905",
                "ani": 87.3481,
                "matched_fragments": 476,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCA_002391235.1",
                "gtdb_species": "s__Treponema_D sp002391235",
                "ani": 86.9141,
                "matched_fragments": 443,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902799665.1",
                "gtdb_species": "s__Treponema_D sp902799665",
                "ani": 86.8511,
                "matched_fragments": 444,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017645785.1",
                "gtdb_species": "s__Treponema_D sp017645785",
                "ani": 86.5036,
                "matched_fragments": 455,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017551705.1",
                "gtdb_species": "s__Treponema_D sp017551705",
                "ani": 84.2471,
                "matched_fragments": 402,
                "total_fragments": 653,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.578,
        "cell_length": 0.836,
        "doubling_h": 0.838,
        "growth_tmp": 34.012,
        "optimum_tmp": 35.246,
        "optimum_ph": 8.037,
        "genome_size": 3224817.721,
        "gc_content": 49.081,
        "coding_genes": 2851.672,
        "rRNA16S_genes": 2.333,
        "tRNA_genes": 45.545,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.933,
        "range_salinity": 1.0,
        "facultative_respiration": 0.046,
        "anaerobic_respiration": 0.953,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.916,
        "thermophilic_range_tmp": 0.083,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.107,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.035,
        "spiral_cell_shape": 0.857
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__"
    ],
    "_genome_taxon": [
        "uncultured",
        "Spirochaetaceae",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "Treponemataceae",
        "Treponema",
        "D",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}