{ "type": "genome", "identifier": "GCA_902758485.1", "organism": "uncultured Prevotellaceae bacterium", "title": "uncultured Prevotellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "THE ROSLIN INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_902758485.1", "bioproject": "PRJEB31266", "biosample": "SAMEA6148502", "wgs_master": "CACVZF000000000.1", "refseq_category": "na", "taxid": "370804", "species_taxid": "370804", "organism_name": "uncultured Prevotellaceae bacterium", "infraspecific_name": "", "isolate": "RUG10369", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/17", "asm_name": "Rumen uncultured genome RUG10369", "submitter": "THE ROSLIN INSTITUTE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/758/485/GCA_902758485.1_Rumen_uncultured_genome_RUG10369", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-17", "dateModified": "2020-02-17", "datePublished": "2020-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotellaceae bacterium" ], "sample_taxid": [ "370804" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.120 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.36, "contamination": 2.32, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3890424", "Number of Sequences": "152", "Longest Sequences (bp)": "155706", "N50 (bp)": "57053", "Gap Ratio (%)": "0.001131", "GCcontent (%)": "48.8", "Number of CDSs": "3311", "Average Protein Length": "344.6", "Coding Ratio (%)": "88.0", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella ruminicola", "strain": "strain=ATCC 19189", "accession": "GCA_900108375.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 79.3125, "matched_fragments": 326, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=Bryant 23", "accession": "GCA_000025925.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 79.2745, "matched_fragments": 335, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 78.1644, "matched_fragments": 212, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8747, "matched_fragments": 113, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8162, "matched_fragments": 107, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000242335.3", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 76.7419, "matched_fragments": 80, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000220215.1", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 76.7301, "matched_fragments": 80, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 76.715, "matched_fragments": 76, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 76.6822, "matched_fragments": 82, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.641, "matched_fragments": 67, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.5009, "matched_fragments": 88, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 76.3407, "matched_fragments": 54, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 76.2912, "matched_fragments": 56, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 76.2221, "matched_fragments": 51, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleniella intestinalis", "strain": "strain=PINT", "accession": "GCA_013166595.1", "taxid": 2736291, "species_taxid": 2736291, "relation_to_type": "type", "validated": true, "ani": 75.8989, "matched_fragments": 51, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 75.8711, "matched_fragments": 79, "total_fragments": 1214, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.36, "contamination": 2.32, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_900314995.1", "gtdb_species": "s__Prevotella sp900314995", "ani": 96.3537, "matched_fragments": 871, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.73", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCA_900318395.1", "gtdb_species": "s__Prevotella sp900318395", "ani": 81.3314, "matched_fragments": 508, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_016286575.1", "gtdb_species": "s__Prevotella sp016286575", "ani": 80.8649, "matched_fragments": 409, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900315525.1", "gtdb_species": "s__Prevotella sp900315525", "ani": 80.7685, "matched_fragments": 458, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.76", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900110085.1", "gtdb_species": "s__Prevotella sp900110085", "ani": 80.7107, "matched_fragments": 521, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.96", "min_intra_species_ani": "96.96", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900315035.1", "gtdb_species": "s__Prevotella sp900315035", "ani": 80.6087, "matched_fragments": 452, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017460765.1", "gtdb_species": "s__Prevotella sp017460765", "ani": 80.3816, "matched_fragments": 374, "total_fragments": 1214, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902784615.1", "gtdb_species": "s__Prevotella sp902784615", "ani": 80.3812, 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