{
    "type": "genome",
    "identifier": "GCA_902758875.1",
    "organism": "uncultured Eubacteriales bacterium",
    "title": "uncultured Eubacteriales bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "THE ROSLIN INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_902758875.1",
        "bioproject": "PRJEB31266",
        "biosample": "SAMEA6148542",
        "wgs_master": "CACWAQ000000000.1",
        "refseq_category": "na",
        "taxid": "172733",
        "species_taxid": "172733",
        "organism_name": "uncultured Eubacteriales bacterium",
        "infraspecific_name": "",
        "isolate": "RUG10409",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/15",
        "asm_name": "Rumen uncultured genome RUG10409",
        "submitter": "THE ROSLIN INSTITUTE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/758/875/GCA_902758875.1_Rumen_uncultured_genome_RUG10409",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-15",
    "dateModified": "2020-02-15",
    "datePublished": "2020-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Eubacteriales bacterium"
        ],
        "sample_taxid": [
            "172733"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom"
        ],
        "sample_host_location_id": [],
        "data_size": "0.565 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2023784",
        "Number of Sequences": "258",
        "Longest Sequences (bp)": "48010",
        "N50 (bp)": "11345",
        "Gap Ratio (%)": "0.016257",
        "GCcontent (%)": "62.5",
        "Number of CDSs": "1717",
        "Average Protein Length": "310.3",
        "Coding Ratio (%)": "79.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902768995.1",
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                "matched_fragments": 380,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.10",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 15,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900319345.1",
                "gtdb_species": "s__RUG472 sp900319345",
                "ani": 95.1613,
                "matched_fragments": 455,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 6,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_902786465.1",
                "gtdb_species": "s__RUG472 sp902786465",
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                "matched_fragments": 444,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.79",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902761365.1",
                "gtdb_species": "s__RUG472 sp902761365",
                "ani": 87.6443,
                "matched_fragments": 407,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902802805.1",
                "gtdb_species": "s__RUG472 sp902802805",
                "ani": 87.5246,
                "matched_fragments": 403,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.22",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902801845.1",
                "gtdb_species": "s__RUG472 sp902801845",
                "ani": 87.3343,
                "matched_fragments": 447,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.35",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902802575.1",
                "gtdb_species": "s__RUG472 sp902802575",
                "ani": 86.9871,
                "matched_fragments": 408,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.40",
                "min_intra_species_ani": "95.40",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017545535.1",
                "gtdb_species": "s__RUG472 sp017545535",
                "ani": 86.745,
                "matched_fragments": 431,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902798825.1",
                "gtdb_species": "s__RUG472 sp902798825",
                "ani": 86.5262,
                "matched_fragments": 421,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "97.83",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902765005.1",
                "gtdb_species": "s__RUG472 sp902765005",
                "ani": 85.5167,
                "matched_fragments": 432,
                "total_fragments": 542,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-138;g__RUG472",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__CAG-138",
        "g__RUG472",
        "s__RUG472 sp902768995"
    ],
    "_genome_taxon": [
        "uncultured",
        "Eubacteriales",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Christensenellales",
        "f__CAG-138",
        "g__RUG472",
        "s__RUG472 sp902768995",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Christensenellales",
        "CAG-138",
        "RUG472",
        "RUG472",
        "sp902768995"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}